Protein Info for mRNA_881 in Rhodosporidium toruloides IFO0880

Name: 9249
Annotation: KOG4626 O-linked N-acetylglucosamine transferase OGT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 261 PF13432: TPR_16" amino acids 68 to 129 (62 residues), 22.2 bits, see alignment E=9.3e-08 amino acids 170 to 218 (49 residues), 23.3 bits, see alignment 4.1e-08 PF13181: TPR_8" amino acids 100 to 125 (26 residues), 14.1 bits, see alignment (E = 2.2e-05) amino acids 190 to 218 (29 residues), 17.2 bits, see alignment (E = 2.4e-06) PF14559: TPR_19" amino acids 171 to 209 (39 residues), 30.7 bits, see alignment 1.8e-10 PF07719: TPR_2" amino acids 190 to 218 (29 residues), 23 bits, see alignment (E = 3e-08)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (261 amino acids)

>mRNA_881 KOG4626 O-linked N-acetylglucosamine transferase OGT (Rhodosporidium toruloides IFO0880)
MLRQLARTASKAAQRPLARSLATQALSRPALRSPRTPSSPSVLMRQASSTTPHSSTVDPQ
ESAAQQALDEGTEALSRGDLETAKKAYERSVGIKQTSVGYYNLGVVQYQLRDLASAITSF
EASIEHTPSSVKPTFPDPDAPTPELTPAQAILADTHTNLGAAYILTSPPRPEKALEHLQK
ALMMNPDDGEVCYNLAAVLEATGELDEALIAYERSLKLGIARAEINVRNISAKIIGKRRE
EEEKAKQTGGSVASQDVSPSS