Protein Info for mRNA_887 in Rhodosporidium toruloides IFO0880

Name: 9255
Annotation: K04409 PAK1 p21-activated kinase 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1069 PF00786: PBD" amino acids 495 to 553 (59 residues), 74.3 bits, see alignment 2e-24 PF00069: Pkinase" amino acids 794 to 1045 (252 residues), 244.6 bits, see alignment E=3e-76 PF07714: Pkinase_Tyr" amino acids 799 to 1041 (243 residues), 154.3 bits, see alignment E=9.8e-49 PF14531: Kinase-like" amino acids 842 to 980 (139 residues), 26 bits, see alignment E=1.5e-09 PF17667: Pkinase_fungal" amino acids 887 to 964 (78 residues), 24.8 bits, see alignment 2.3e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1069 amino acids)

>mRNA_887 K04409 PAK1 p21-activated kinase 1 (Rhodosporidium toruloides IFO0880)
MLLHAPSSPRNSRLSLFERRRCPHPTRLSTCASSPALRQSAASITPTIILTPDYRPLRTA
NTPPSDLHLDFFASPPSPRTLRRPSFSPRLLRSYLSIPSLRTAKSLPSHNSHRHPSTGAQ
PVSIVGRRPGSSGTGAYTGAPAPFSATPSGAASGASGSRNIGGPMALQSPQAAAYQYQQR
QQQQQRAQEPAPASSSTQQQQQQQRLNSQPGRSAPAPPGSTNGHVYDADNKRNSYGGGAA
RSSYLPSSGRPPFASANSSASFQPSRPAPPVPASSASSAASSPARNYAGPTSNLPGDSWE
MVNDDSSPPAAPPKRPPHPSSGMSHSYRDMSDALPSPSSSSPASSRPTQPPYAHHQPSHS
IAQSYSLLTDPATSAATNLSMLDTSSSSGPRPPSLAVPSPGGLSPGGAALSHRPSSEGTD
YVSTPAAGTRAGSAEGAAQGTSTPGTASSAGNGQRYSGERDGGGTTKEGKKSKGFGSFFA
DVFSNTGGGGGRKVEISTPYDPVHLTHVGFNSDTGEFTGLPKEWQQLLQNAGVSREEQAA
HPQAVAEIVAFYQDATKGLAAPPGAEQDDVWDKFRKASGSAQGGQGPPGPGQGNFEQPRA
APPPPLRKAPGPPPGVAPAPAPQRPAQPPSSQQSRYERERSAERVGAGGPGSLPTSPDRR
APSPGEALYRSQSARASPTPPPSSAAASTLNKAKLALERAQSQRAAGGNALPAPPAPHRP
APPKPPGPPQQQQQQQLATKPSLRKPANLDGEAAKPGGPGAQPRRREPKSKGKDPDIVER
LKAICTDADPTKLYRNLVKIGQGASGGVYTAYQVGTNMSVAIKQMNLEQQPKQDLIINEI
LVMKESRHQNIVNFIDSFLVKNDLWVVMEYMEGGSLTDVVTANIMSEGQIAAVSREVLQG
LKHLHEHGVIHRDIKSDNILLSMQGDIKLTDFGFCAQIKGDNAKRTTMVGTPYWMAPEVV
TRKEYGPKVDVWSLGIMCIEMIEGEPPYLNEAPLRALYLIATTGSPAIPNAEQLSVVFRS
FLGVALEVDTDKRPDAAQLLQHSFISKSQPLTTLTPLIQAARQAAKSKA