Protein Info for mRNA_892 in Rhodosporidium toruloides IFO0880

Name: 9260
Annotation: K11827 AP2S1 AP-2 complex subunit sigma-1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 143 PF01217: Clat_adaptor_s" amino acids 1 to 142 (142 residues), 181.3 bits, see alignment E=4.9e-58

Best Hits

Swiss-Prot: 78% identical to AP2S_NEUCR: AP-2 complex subunit sigma (aps-2) from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)

KEGG orthology group: K11827, AP-2 complex subunit sigma-1 (inferred from 85% identity to cci:CC1G_03085)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (143 amino acids)

>mRNA_892 K11827 AP2S1 AP-2 complex subunit sigma-1 (Rhodosporidium toruloides IFO0880)
MIRFILVQNRQGKTRLSKFYVPYEEDEKARIRGEVHRMIAPRDQKYQSNFVEFRNYKLVY
RRYAGLFFSFCVDANDNELVWLEAIHLFVEVLDAFFGNVCELDLVFNFYKVYAILDECFL
AGEVEETSKQVILERLEYLERLE