Protein Info for mRNA_923 in Rhodosporidium toruloides IFO0880

Name: 9291
Annotation: K03446 emrB MFS transporter, DHA2 family, multidrug resistance protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 575 transmembrane" amino acids 55 to 75 (21 residues), see Phobius details amino acids 94 to 116 (23 residues), see Phobius details amino acids 124 to 149 (26 residues), see Phobius details amino acids 156 to 174 (19 residues), see Phobius details amino acids 181 to 200 (20 residues), see Phobius details amino acids 212 to 232 (21 residues), see Phobius details amino acids 252 to 271 (20 residues), see Phobius details amino acids 278 to 297 (20 residues), see Phobius details amino acids 318 to 338 (21 residues), see Phobius details amino acids 358 to 380 (23 residues), see Phobius details amino acids 387 to 405 (19 residues), see Phobius details amino acids 411 to 435 (25 residues), see Phobius details amino acids 446 to 469 (24 residues), see Phobius details amino acids 520 to 539 (20 residues), see Phobius details PF07690: MFS_1" amino acids 64 to 461 (398 residues), 139 bits, see alignment E=1.9e-44 PF06609: TRI12" amino acids 75 to 312 (238 residues), 48.8 bits, see alignment E=4.1e-17

Best Hits

KEGG orthology group: None (inferred from 46% identity to ppl:POSPLDRAFT_50761)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (575 amino acids)

>mRNA_923 K03446 emrB MFS transporter, DHA2 family, multidrug resistance protein (Rhodosporidium toruloides IFO0880)
MTSAASLDSPTSIAKEHPPVASSGLSQTASTGQGSQTPTNDQVDAPSSPKAKKPLAFWMV
FVALCFSLFLSALDVTSVSTVLPDMANDFKSADYSWIGSAYALTSTALIPWTGGLANIFG
RRPVLVAALLIFALGSALTGGAQSMAMAIAGRSVQGIGGGAILTMSEIIVIDLVPLAERG
AYMGILGAVWAIASVAGPPVGGGLATAGAWRWLFYLNLPFTGLALALVMVFLNIKAPQTT
LKEKLERMDYANVVFVAGATSLILGLTWGGSAYAWSSYHVLVPLILGIVGLIVFLALERS
VVKYPTVPFEILTHPTALVGYVTCFLHSVAVLTVIYFYPTSYFQAAKTASPIRAGIDLFP
LCFTIAPFAILAGASVTVLGKYKAQNVVAWCLIVIGFGLMTLLKWDSKTGMWAGFPILLG
IGFGALYAGLNFPVLAPIPVQQQPLAMAFFGFIRSLGQVFGITVGSTILQNQLAKKLPRE
FAAQFGGRGDAAFAAIPLIKDLPEPLRTSVKAAFADSTRTIWWFCLGITCAGLVVSLFMK
DIALATETDEENWGLKEREKEAKEGKAEEGEVLPA