Protein Info for mRNA_931 in Rhodosporidium toruloides IFO0880

Name: 9299
Annotation: K14794 RRP12 ribosomal RNA-processing protein 12

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1298 transmembrane" amino acids 74 to 90 (17 residues), see Phobius details amino acids 114 to 123 (10 residues), see Phobius details amino acids 252 to 257 (6 residues), see Phobius details PF08161: NUC173" amino acids 392 to 599 (208 residues), 198.8 bits, see alignment E=4.1e-63

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1298 amino acids)

>mRNA_931 K14794 RRP12 ribosomal RNA-processing protein 12 (Rhodosporidium toruloides IFO0880)
MDAQWDKVRKQLNAQTKQVQRPAQLLVAVESTLASTDTPTAAIAPQAYWVAFLSTLEQLA
GDAEAAKPDSDKRALLEACLYLLALLVPFLDKPALRARIDILRLLPPLFQSFAAHAPAVK
SLIALAQSLLASASQTQLERDLDGCRSVYATILSLCADARPKVRRRAQEAVQAVLASTPP
PAVSHPYAGESAEWICSKLEEAVKGAKRAHGGGGKKGDEHGGDESRAIALLTFVKNLGSA
WPASSTSTLLSIILSTLTLSSPHLTLSALTLLSHLFSASHAASSISDDHVRDTLEALVNA
KPKVAEGSEQGEKLLAGWAEGVGEGMVALARSDANAGLSRTAMLFPEILPLLASAQTPAL
RTAVETSLSLMIRHCLTDADITSNGAVISSVVSHVEKAITSPRYAASAQPHVLALVKALF
LRLRVRVNGEPAASRLLSKSLVLVAKAREDSRFEWKKEADAVLDAAVKILGPARVLELVP
LNLDPSESPSKARAWLLPLLKPAITNTRLGHFRETFVPLSAAFFSKAEEARSGGRDMEAK
VWETLVGQVWALLPGYCEYPTDLVESFDTDFVSLVANVVYTQSTLRPAVFKALQTLLTTT
LTLANSTSPPDLLREQFSLTPADGKASLAHLRTLAQTILSVAFNVYGKMNRGEGGYVLET
VGLWFSILPPDDLVATYERVEGLVGQALAGDALPPSRKDDPTIPPSHALLDILIAMIPHA
HGAVARRLFDFAMQDRVLGCVDQAVQKKAYRILARLCEEKGKEVVSGREGEVIDKIVDGA
PQVANGAKRDRVALLSAFVPLIPSDSLHIVPSLIPEAVLSTKESNGVTRESAYTLLVSMG
QRMANGGRIKRHLIKGMEDAMEDEVDASEEEFVTMLSAGLAAANPHMIAATIGALGRLVW
EFHTSLKDSYLTDLLETIVVFLSSANREIVKAGLGFVKVAVVTLESALVLPSLPQLVPAL
INWSHEHSNHFKVKIRHLLERMIRKYGYDAVERYVPEDDKKLVSNIRKRQARSKKKKAAA
AAAGMDVDGEVEEDGEIAPRPQAAQRSAYDEVLYGSDSDVSASEDEEAGEGPVRHAPTGV
KNRKSQARKAKKEEGGAFIQEGEDEVLDLLDEKMMSRISATRPAPAKTARKPLDSHFKAD
SSGRIRIEEEGSSDDDRGASTSAGANAGPSGMGDYLEAMRGEDGHTRDARGRIKFNKTQG
KRARGDDFDDDDPERDVPVTEGLKELDVTGKKRWKKQKKEVQQVGGEFKAKRAGGDVKKN
GMQPYAFVPLQQVAGKKSNQKGAPKVGITGLKRSSGKK