Protein Info for mRNA_933 in Rhodosporidium toruloides IFO0880

Name: 9301
Annotation: HMMPfam-NDT80 / PhoG like DNA-binding family-PF05224,ProSiteProfiles-NDT80 DNA-binding domain profile.-PS51517,SUPERFAMILY--SSF49417

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 692 PF05224: NDT80_PhoG" amino acids 456 to 621 (166 residues), 48 bits, see alignment E=9.4e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (692 amino acids)

>mRNA_933 HMMPfam-NDT80 / PhoG like DNA-binding  family-PF05224,ProSiteProfiles-NDT80 DNA-binding domain profile.-PS51517,SUPERFAMILY--SSF49417 (Rhodosporidium toruloides IFO0880)
MDAPDDRPTDDPVRPCTVSWAAQLLQQFQTSPLDPAHLAQTPSTHPFGFSEVIQYTTASP
AVNYSAGSSASENFLPSTSHFLSHHPPPAHPILDASTPSVPVNPPTYPFSFSCAPVAAYN
ESVNFAYAASPVLETPFTSWQALSPATSVHPLTFPPAYPPFNLPSSTHLSQPSHHADFHL
APVPSEPVPAPPPYQADSPLVDSSLAGFRFVSPSASPSYPTQQQPPLDAGLNGGTDTQGA
SSSFASSPSSAPLFLPPSPAAFAVVESQGYLSHLSLSPDTTAYASATTATPTDEIGKVVT
NEGSTGRPTRRSKKRASYIDDEEGGASSEEDAAIQADDGGEYRPSRKRSKSSIVSSSHRR
QLSITSTSSFASTSTSATSPATSPVRTTSTRQSLHKPLEVIDVAEIGEWTSETDFFGPWR
QKEDVRVFDAHGNEVTLSPDIGNPSSFTYDSTLKRWRTYRRNFLTLTISLDSPLALDTLR
TSHSLSPINHVEVGLTSATFPKGANAELLQLDGNRKLRDAVTLGRQVLQSVVGHNKVDEE
RPQEDAETSPAPHRYTSTFRRVQFRHSTANHPSLAANATDKHFLVRCTLYVVHEDETVVE
LGGWNSAMLIVRGRSPGNFGEDGKGKKKSSKRVPYGADTDTTDDDAPGEVVLDDGGNIVV
LDDPHPSQSGKTASTGKHGGSKRKTKKKARAT