Protein Info for mRNA_942 in Rhodosporidium toruloides IFO0880

Name: 9310
Annotation: KOG1743 Ferric reductase-like proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 139 transmembrane" amino acids 9 to 28 (20 residues), see Phobius details amino acids 34 to 52 (19 residues), see Phobius details amino acids 64 to 84 (21 residues), see Phobius details amino acids 87 to 108 (22 residues), see Phobius details PF04178: Got1" amino acids 17 to 112 (96 residues), 56.5 bits, see alignment E=1.9e-19

Best Hits

Swiss-Prot: 48% identical to GOT1B_MOUSE: Vesicle transport protein GOT1B (Golt1b) from Mus musculus

KEGG orthology group: None (inferred from 69% identity to lbc:LACBIDRAFT_294074)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (139 amino acids)

>mRNA_942 KOG1743 Ferric reductase-like proteins (Rhodosporidium toruloides IFO0880)
MWLTDAQKIGVGLTSFGAFFMFLGVVMLFDGPLIALGNILFVSGLPLIIGLRKTMYFFSR
RQKLRGSVAFAAGILLVFLKYPFFGVIIEMFGFLNLFGDFFPVVLSFMRQLPVIGHFLSA
PGVRQVTDRICGVRKQSPV