Protein Info for mRNA_960 in Rhodosporidium toruloides IFO0880
Name: 9328
Annotation: K20409 WDR59 WD repeat-containing protein 59
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1359 amino acids)
>mRNA_960 K20409 WDR59 WD repeat-containing protein 59 (Rhodosporidium toruloides IFO0880) MADASPHSDDPATPPRQNSIRDGAPMPDDEPSLPAFEPDHEDTFHQLMSIMIDEPIGSMS ISPANRDVALGARKGLFIVDLQNPYDPPRFLPHNSSWEVADVQWNPFPHRSEWVVSTSNQ QAVVYNLSLSPSLSSSPVEHTLYGHTRAVTDINWSPGSPEVLATCAMDGWVMAWDLRAGY GGGGGRGRGRKPIWRVCGWGAPATQVKFNRREPHVIASSHANVVNIWDDRMGAEPVTTIK GHTAKIYGIDWCRKDSKQIITCSLDKSFKSWRVSDTDTPVRTVETTSPIWRARWLPFGDG MLTLPQRSDHALSVWSVKNIDEANEKGEKPKPVVRFEGAREGVKEFVWRTRGGEDLESDD RQFQLVTWAKDRRLRLWPISEQIAKDVGHVKGSRIQVPVTRRGGPDISYRSFAEAPAPPL PLTFSPPTPNSATKALPSGASLLSASFSQSPASTPSLLTSSLLKSNLTSSASANKENLLP SPLPYPLPSAGQRASAATMTTTKVRSRRQKEHDRLAWMEGVKIIRPPQAVEAGAAEAGDD EEEANVGAGGEEHEAPEAVVAKANSVARGTDAGTATAREGEETERAESVMSRESMQTGTA VGKDILYANLGEEITSVVRRFPRVNFEKVHVAGRTCTVSLYSPLFIRATFSFPKGYPASS PPAIELERSIDVSLKQRANILQGVRRLMSLRAERGLPSFEQALRYLLGDRSVERAEEEED DEAEEGLEGSTMNNLTADILRNNINVPPPRRGGASFGPSGQLVVFFPTNVFVAPGSDMDG TTSPPNEPELPKRKFPLRLSEVFGYLPSESTDYEGDYQETDEALQVTRTHNLRSYPTMRD RSRAVAPHGELSPSFSTVVKIKDVSHLTVNSPARSFSSLGKPAVDVARENALGAIAAKDL LLAKIWTTVVAFFESGLPGDAGAGSPRLDSLLAERMLQELLKYLAHLRDIQTLGIIACLL EIHTRDVEMASRLRSAGRPPEIDYFSQRHRPIDPVVDIDFEDGSGEQTPLPTTASLPRLR GSDGSSFSPKPSWANLSGFFNSSMLSLRSASPNSPSSPDRPGSGGTRPPSRGGKSSPSSL SPGMMSARSPLRVQQAHHMTPQHASGGSTPLARDGEETAGESRHHRTKTSPNVTFGATSV ALIPSKATAQAALSGDDEKPRQLKRVAVTFNQTMHLHKSLPWWLSPRAQLELELICLSYA ELLNRWGRDVERAQVLKLCRAAVEQSSARLAVARDRIQEMNGLGKTATIEQQRSCTRCGT SVKSAEPTCPKCRIRQRAVTCILCHLPVNGLVQSCSTCCHVGHLSCLSSWFTSSSTCPTG CGCSCIKEGGSSGLFSLPRPSSSSSSPATAVHEISRSAC