Protein Info for mRNA_995 in Rhodosporidium toruloides IFO0880

Name: 9363
Annotation: KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1319 transmembrane" amino acids 430 to 453 (24 residues), see Phobius details amino acids 474 to 494 (21 residues), see Phobius details amino acids 506 to 534 (29 residues), see Phobius details amino acids 546 to 569 (24 residues), see Phobius details amino acids 579 to 605 (27 residues), see Phobius details amino acids 660 to 684 (25 residues), see Phobius details amino acids 1078 to 1097 (20 residues), see Phobius details amino acids 1116 to 1135 (20 residues), see Phobius details amino acids 1149 to 1160 (12 residues), see Phobius details amino acids 1162 to 1182 (21 residues), see Phobius details amino acids 1193 to 1214 (22 residues), see Phobius details amino acids 1226 to 1253 (28 residues), see Phobius details PF00005: ABC_tran" amino acids 82 to 250 (169 residues), 89.3 bits, see alignment E=1.4e-28 amino acids 752 to 908 (157 residues), 85.6 bits, see alignment E=1.9e-27 PF01061: ABC2_membrane" amino acids 414 to 620 (207 residues), 94.9 bits, see alignment E=2e-30 amino acids 1060 to 1262 (203 residues), 55.2 bits, see alignment E=2.7e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1319 amino acids)

>mRNA_995 KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily (Rhodosporidium toruloides IFO0880)
MAVVRDAMAAEKPPDRPGEVPASDSLLSSLPPPQPFAVVVRDLAIVAPPAQWSLPLAIPI
TVPRFVQRRLQKAEALAGKELLRNVNLDIAAGEVLAIIGGSGSGKTTLLNAIAGRATGLE
TSSGAIEVVPLARSSSSASSDTLSTTQPLSVKAAKKVIGYVRQDDFLLPFLTVRETLAFA
AALRLPKTVSAETRSAIVEQTITELGLADAANVIVGGPFRKGISGGERRRLTIGCTLVQL
PSVLVLDEPTTGLDSFTAFRLLETLRSLARRGRAVIVTLHGPRSDAFPIFDKLLLLSRGS
PVYSGPGRDILPHFDSLGYPAPEHTNPLDFVIDLSSVDNRTDEAEESSKERVGALISAWR
RKEASTDSSPRPRSPRPQAKLASPGRDVEKAERSRDDGAEDAQQELKRANLVKQTALLTR
RGLRNVFRNYGQLIGFAVQAIIIGVVVGLVFLNPPETPSGVQSLKTVVYFSTPAMYYLSI
ILAVFILCGELIVFDREREDNMYKTVPWVASVFLSYLPANVVFPTIYAIIVYFMTGFRRD
DLAENLLSFIAQCIMQQVAAWSYALLCCAINRSFAQASLLANGFSIPMLLSSGYLITNLG
AWIAWTRWLSPYFYGFHWIALLQFRGRTFACDGVTGPARNQCEGLNVLRGMRFDLDTPLY
VYPLGLLGFIVVTFVLATIILAFYHPGGVKHATQHAPSKQSDSHNSRTKGEFADLIKTKS
KRSVDVAVNDLRLVVSRRGLGRKSGNDEKVILENVNASFPAGQVSVIMGPSGAGKSSLLQ
MLAGRLSSGPMSAFRSEGSIMLNNQEFDSSLASLVAFVEQEDSHHLPALTVRETLRYAAR
LRLKDRSVAACDARAEEVLRLLGLATCADTLVGGSLVKGISGGEKRRLSLAVQLLSDPAV
LYADEPTSGLDAFTAQNVMQTLRDLASDGRTIVISVHQPRSDIWALFDNVVLLAKGGRTA
FSGPASEILPFFESAGETCPPNFNPADFIIDAVSLDHRSEEAELATKQRVARIVDTWAQR
QKADLEKRNSGSTLASPSHVGDKRPLGSAKLRKTPFARAFPVVLARSFKNLRRQPDVFVA
RLSNPPFMALLFWIYFARLGYGPSSSQDRIGLLQETTALPFVGMLACIAIFPSEMNLYRH
EFMSSARYGVTTFLSVYTIQETITSAISSFLFSVIFTFGMNLQYSPARKFFEFWFSSWAL
ISTGESVGIIFSAYTSNGGLATSLVSAALTLLAQLNGIISVTMPYFLVVIGWISPMRPQA
ELQIINEMTGLRFNCSSSEIASGACIATTGEQVLDTFGLPHGGTGAPISPFCRSKEERT