Protein Info for mRNA_999 in Rhodosporidium toruloides IFO0880

Name: 9367
Annotation: HMMPfam-PAPA-1-like conserved region-PF04795

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 622 PF04795: PAPA-1" amino acids 441 to 549 (109 residues), 53.1 bits, see alignment E=2.4e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (622 amino acids)

>mRNA_999 HMMPfam-PAPA-1-like conserved region-PF04795 (Rhodosporidium toruloides IFO0880)
MVVLPALCQGTAKLLEIILSLQRAATSPRSLSRSFISASSLSRSAGLVHTLRMPPRIRSP
TPSEDEQDQLDSGSDSGTPTTSIAHAPVASSSTARAGAGATSIRIKPPQQGGAAAGAGGA
RASRGKKRSYADDDEDDEDAMDVDEEGDAYEDEKEEEDELEDDEEDWSPSGSGTATPAKG
SRSSARAAAAASRKPPKPSAPKGGAAASAGRRRSSAANDSPSTSATATPAPTPGPAAAGG
ALSGMKIKFKLGAGGGADSAQAGSSAATPVEASSPASSVAGGRRGKGAASSGAGKGKGKG
KGKGKKKAESDESDASLELSNEDDLPSSRFSTSALSGSDSNAGEFDELASDGGEGFDDGF
SDSGSERSGSTSTAGDPYGGRKTARQRAKEMGGDEALELMSLPNGQCSLLQCSAAPRRYD
DSLCCHAVVSKAPPPVRTEAEIALARAEKSRRRKSQADKKLEDEKTETINRLLNKQVGRT
SSSSGRGKRGGGRGGGRSRSKLNKSVTADGVESGDEEAVAAVAAAGAAEAVELEKQRNVK
PTIARWISSIKPEADQGEGVFRLSYSVPEGHSFALPTAAAPRVDAGQREAKKPKTRRFGA
EEREANRRANEDGWRKVLLRAA