Protein Info for mRNA_1005 in Rhodosporidium toruloides IFO0880

Name: 9373
Annotation: K08794 CAMK1 calcium/calmodulin-dependent protein kinase I

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 PF00069: Pkinase" amino acids 21 to 289 (269 residues), 231.9 bits, see alignment E=9.1e-73 PF07714: Pkinase_Tyr" amino acids 22 to 283 (262 residues), 132.5 bits, see alignment E=1.7e-42

Best Hits

Predicted SEED Role

"Serine/threonine protein kinase PrkC, regulator of stationary phase" in subsystem Conserved gene cluster associated with Met-tRNA formyltransferase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (417 amino acids)

>mRNA_1005 K08794 CAMK1 calcium/calmodulin-dependent protein kinase I (Rhodosporidium toruloides IFO0880)
MGILDSLHHQPESYARKKNYKFEGVLGHGAFGEVKQATWSPPPGNAHYDDAQKVGGHIEV
AVKVVKKKALRGDLQAVLDEIEVLSGLNHPNIVKLYDHFESRDKYYLAFQLASGGELFEQ
ISSRGKYTEGDAAKVIKNVLEGVKYLHSHNIVHRDLKPENLLYVRPTSDQIVIADFGIAK
HLDDGESLTSLAGSPGYAAPEVLLQKPHGKPVDLWSVGVITYTLLCGYVPFRSTETQQLI
EECKVAKLEFHEKYWKNVSAEAKAFIKALVKPNPGDRPTAEQALKHKWLVDALNKEHEHD
LSAGFKANWTPSRKWKQSINTVMAAQRFARATRGGKAGAVDGRRGSDSTDESDDDGFHTA
ENEEDERHARVRSRELNAKEHERQRGEGREGRTSAERERQRTNALNAVSDGVEQLSL