Protein Info for mRNA_1010 in Rhodosporidium toruloides IFO0880

Name: 9378
Annotation: K16569 TUBGCP2, GCP2 gamma-tubulin complex component 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 878 transmembrane" amino acids 236 to 254 (19 residues), see Phobius details PF17681: GCP_N_terminal" amino acids 123 to 519 (397 residues), 198.5 bits, see alignment E=2.1e-62 PF04130: GCP_C_terminal" amino acids 523 to 871 (349 residues), 178.1 bits, see alignment E=3.2e-56

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (878 amino acids)

>mRNA_1010 K16569 TUBGCP2, GCP2 gamma-tubulin complex component 2 (Rhodosporidium toruloides IFO0880)
MREAVNHILSFCAAPEGSFIAETSFSRAPVNSRLPHISPHRVAAQPARKRASTAQQPASR
RNGAAIDDDEEDDVSDSGSVIEEDEEDEETKLRKEKARRKQLGLDKEPLDGLSAELQEAL
LTEDLLFVLMGIEGRYVEFDPAYTPEDDYERLQGAKFIIDPQLDPRISALVSRFLPLATY
YTAITAFIEQYSVLEHGTVNHALCAAIREMLKDYLVLLARIEEQFNSSSSFTLQRFWLLV
HPALNALSLVYALMLEIVELSVPSVEDEDDEENSDADSDDMYGGGLGDVLADLKAASAAA
RPESANKSAPWRFGPSLGGETLSVIANRLIRTSGDPAAHDLYSHLLLRASQPYTQILLGW
ISTGRLEDRWEEFCVREQKGFSTGTLDADYTDEYWERRYTLRDRTGTSSASSANASGNGK
SPMQFSSTDADDQPRLRGLAGGAVIPPFLEPWKDKILLAGKYLNVIRECGIEIEVPDEVR
LGAGDEQDGMVDMQAEGFFKRIEAAYAYANKTLLKLLFEQEDLLSRLETIKHYFFLHAGD
VFTHFLDMAKFDLGRKKRRIPIERLQTHLDLALLRSTNQSGSAKSETFKDDLRVVFEDVT
VADWLLKIVKQTGAIVGPDGTPVDVLDSGKKAASEKQAKESSELTGWEVFDLDYSVKFPL
SLVLSRKSITYYQMIFRHLLRLKHLERNFQETWTEHLKTPAWRRRSPYSELQAFKGRVFA
LRARMYDFVKQVFDFAVSEVLEVRWAELRKKLEGCETVDQLLKDHDNFLNTCTNECLLTH
QSLLEILHQKLFNTCYVFNSYTTTFTLIVVQSEAEANGDWARVSSGKFKEHWTFLDRFEK
HFNHFSTLALQHLRVAAASENSRILPLLSRLSSLAEKR