Protein Info for mRNA_1016 in Rhodosporidium toruloides IFO0880

Name: 9384
Annotation: K14833 NOC2 nucleolar complex protein 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 717 transmembrane" amino acids 502 to 519 (18 residues), see Phobius details amino acids 536 to 553 (18 residues), see Phobius details amino acids 604 to 624 (21 residues), see Phobius details PF03715: Noc2" amino acids 387 to 694 (308 residues), 375.5 bits, see alignment E=9.7e-117

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (717 amino acids)

>mRNA_1016 K14833 NOC2 nucleolar complex protein 2 (Rhodosporidium toruloides IFO0880)
MAISKRKQTRNFLKSGQLSSQIEARQKRRAFEQKKKGRDARRNKGVLPAHQQVKDVDSAD
EFEEVKRKRKEKEVEEEEEDEDFDVDGVLGAEGLGDDDEAEEQGEDGASDLEDDDLSGLS
DGESDSNPMVDMQALAEKDPAFYKFLQDNDPELLNFDADGDAEMDDDDEDEEVSDEEEAR
GKKSKKGKGKEKARKGANEHTLTKEMLRSWQKSILETRSLRSFRKLLHAFRSAASSGIDR
DDLPSTSDSAHAEHYEIHDPKLFRKVVLTTLKYTPVVLSSMVPFKEVNGKFKLSTNSKQY
AIAQRLLKSYFVSLQNLLSTVSSTSDTPSYAVTESANLIPWIVGNRKVARGLVKMLLGVY
EGGASDETKVQAFAALRKLAIAADHSLRESIMKGTYAALLAASRQTSVHTLPAIELMKYS
ASELFLLSGKQETDLAYQLAFSYIRSLAVLLRKGVKDASKEAFKSVYNWQFVHAVDFWSI
VLSTAGDKQRVAEVGESPLQQLLYPLIQVALGAIRLVPTSRYYPLRFHLIRSLLRIVSRT
GTYIPLAASLFEILDSPELTKRNKPSTLKPLDWDYYLKCPTAYQRTRVYADALVEELVYL
LTEYYGALSTSIAFPELALPAIVTLRRHAKKASTAKQGKLVASVKQLVEKLESNTKWIEQ
RREKVEFAPNKRDKVDRFLQIEETDKTPMGTHLKLQRKLREAKKATMERAAHAAEDI