Protein Info for mRNA_1021 in Rhodosporidium toruloides IFO0880

Name: 9389
Annotation: KOG3457 Sec61 protein translocation complex, beta subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 98 transmembrane" amino acids 70 to 89 (20 residues), see Phobius details PF03911: Sec61_beta" amino acids 50 to 89 (40 residues), 59.3 bits, see alignment E=1.5e-20

Best Hits

Swiss-Prot: 54% identical to SC61B_YARLI: Protein transport protein Sec61 subunit beta (SBH1) from Yarrowia lipolytica (strain CLIB 122 / E 150)

KEGG orthology group: K09481, protein transport protein SEC61 subunit beta (inferred from 58% identity to bfu:BC1G_12473)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (98 amino acids)

>mRNA_1021 KOG3457 Sec61 protein translocation complex, beta subunit (Rhodosporidium toruloides IFO0880)
MADSPRTGTPPARIPGAKGPQMQMRRRAAALNGKKDDVPHSARAAGHGGSSSTMMKLYTD
EAPGLKVDPVIVLSLAVVFIFSVVSLHLLSKLVRFFTK