Protein Info for mRNA_1023 in Rhodosporidium toruloides IFO0880

Name: 9391
Annotation: K08272 CAB39, MO25 calcium binding protein 39

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 334 PF08569: Mo25" amino acids 10 to 334 (325 residues), 449.8 bits, see alignment E=3.3e-139

Best Hits

Swiss-Prot: 56% identical to CAB39_BOVIN: Calcium-binding protein 39 (CAB39) from Bos taurus

KEGG orthology group: K08272, calcium binding protein 39 (inferred from 72% identity to cci:CC1G_08450)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (334 amino acids)

>mRNA_1023 K08272 CAB39, MO25 calcium binding protein 39 (Rhodosporidium toruloides IFO0880)
MNFFRPSGSKTKAPPDLVRSLREAIYKLDSPQVGPEQKRKANEDISKYLFQMKVLLYGDG
ETEPQPEIIAQLAQEVYANDLLQLLVHNIWRFEFEARKDVSQIFNNLLRRQIGTRWPTVE
HLSAKEETIFAALKGYENADVALNTGMILRAMLRHEPLARILLYSDKFYNFIDYIEQTTF
GIACDAQANFRETLTRHKPMVAEYLDENYDQFFSHYSLLVQSSNYVTKRQSLKLLGEILL
DRTNFKVMTRYIANEENLKVMMNLLKDRSKNIQFEAFHVFKIFVANPKKPPQIEAILRRN
KDKLIAFLRNFHNDRDDEQFNDEKSFLLQQIEAL