Protein Info for mRNA_1051 in Rhodosporidium toruloides IFO0880
Name: 9419
Annotation: SUPERFAMILY--SSF54928
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1201 amino acids)
>mRNA_1051 SUPERFAMILY--SSF54928 (Rhodosporidium toruloides IFO0880) MSTGPNYQQMLPLGLRWAGVEEDLVVRDPRGEGAVQGVYHQPVQQYGSSLQHPSVPPTRR SSTGMVSLSPNFTSPNATSVSFNGTASFAPLPFPPSEHPLPPPPPDQNPVSPVSTTADSA SPHDKSGPPPPYSEQPNVTEQHTAIPGVVLFQQPVVPAVPPPMPATSFGLARPPSHPQPV YAPILTPWPPVPLRHIDAYLAGAHPYPQVYPSVPGYPLLVPTTNPSPPAPLMYPIGSEHV VQVEPRVEPSPPQAQIAPMPVAPIPIPAPAPLPLVPPIDMTTAVTTYGSPTETTLGACMH PGCYAPVFCELSPCGCRLCRDHLGWVIRNVRTLDVDANRFLSPNEAKETKAKTKKVFRCV SCGAESSKADPPSRRTASTSTQHTDGASSGVAQEDFRSFSIKYFSSGPTPYAPPAEEPAD ESAANDAYAAETGVTGEPSPAHQSPATIVSPFSSMSSMFVQSYPELGVVQHTQTSSVTPT TTAVVMAPPVAAHAGLPAKPLVARPPLPPFPHDFRFPATAPPQHEQQAAQLATAAPQQQQ VPPASAVSTGLPSVPSATERPSSALPAPQPRTPEQARVEAMQHGRRRSATSPPDLIIPNP LETKVTETEQVDTPSSLSSELTLSSTSPSLSTKRHAEPHAAPTGPPITPPKQPLFRHEQL PTQGPAYATGLPVLTRPSFPPGSICVMPRSTSGPFPAAHHAATVPNVPVIAWTGGRHKSH SFHASNGVMRMSEMRPAAKFDAPVGTRNIPPRQPPDTYPEADSVQLEKTRWPLVKVENIP FHTKKSEIESWLPKDALPPKDEVEMPIHLILHRATGRTLPHCYIETASIDTARTLIESKD KSILGDRTVRVKWERPGELLRDLFGQDAYFRQPSVTPAAAPLPLLPPQGFNLPAELISHN DLWHLVSYCEKPIDWRERPVERPFYAIVSVLAKFPWSREDVWNAELRDKVFHATLAIFNK AQECSTCDEGIGFNAICKSILHAAEHCPAFTAEQKKTIRETNRTSFDPSPANFPTLPSRL PPPRPMPLPRAGLTTPPHVARSLPFTPDSQSDSPHAVPSLDCDAYPPSPPEQRSPTQPRR RRTSSSAGGDSPNEEMSPLARPWRGGIGRGSGAWTSYTYKAPLNVANGANGAKMVEALHQ GGQPRFPPPSSPTQPRGPPQLPDTPPASPQTERRKPSSTAQQQEAAQSSYGGENLVGWAS G