Protein Info for mRNA_1052 in Rhodosporidium toruloides IFO0880

Name: 9420
Annotation: K10896 FANCM fanconi anemia group M protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1535 PF00270: DEAD" amino acids 194 to 349 (156 residues), 55 bits, see alignment E=1.4e-18 PF04851: ResIII" amino acids 205 to 348 (144 residues), 64.8 bits, see alignment E=1.6e-21 PF00271: Helicase_C" amino acids 545 to 653 (109 residues), 72.3 bits, see alignment 6.3e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1535 amino acids)

>mRNA_1052 K10896 FANCM fanconi anemia group M protein (Rhodosporidium toruloides IFO0880)
MSDDDFDIDIIDDAALGEIDAIESAYATGSALPPRSLVSKPGLMQRDLFGGVVAPTAQKP
PPKAGPSRTTMGGSGGSAGGAVGETRAKVRLSKTWDPASFARHGWSKKNAAVAKARAKGK
SGKGKQRAYASDEDPWDEEDVLDDDDEDLDGEEFFVDTTYDPNAPILPIKWPPDEQAAKT
FIYPVQADKPLRVYQYNIVQRCLYENTLVSLPTGLGKTFIAAVVMLNFYRWYPRGKVLFL
APTRPLVTQQIKACHYIAGIPQSDCVELTGGTLPKLRTVGWATKRVIYSTPQTVERDLAK
GRLDPRDVTCIVVDEAHRASGDYAYCGVIRYMMCRNPHFRVLALTATPGSRGDAVQEVID
NLHIGRIEVRADDSLDIRQYIHKKSFDLVVLPLGPQLSALRDKWAELMKQYINPLYAARL
LWSNDPVMLAPFAVQQAYAKINGLPGGKRANGKFFPMIKTLAMMARAMEYLVIQSVTSFE
SNLKDIEAAGSKNLINSAGFREVVRETAGLRNRVGYVGHPKMEKLRSMCLEHFKSAQNER
DEFTGEKRETRVMIFCNFRAVVEEIVACLNTQRPLITATPFVGQASAKGVKGKSQKEQLE
TIKKFKAGVYNVLVATSIGEEGLDIGEIDLIICYEANKSPIRMLQRVGRTGRARDGHIIV
LMAEGREEKNWDKANDAYAEVQNALTSNKIFDLYVDGERMLPDHIKPACEQVQIKAQPLD
IEKMTMNGQSRLERKALTESKKEKRKVDVRANAPDDAFLGFRTAGQMAAAKKEKPLPPSQ
VLRKRKAAALLTLDEESHLRSKWQHDSSGKLVRPQVFDLEELPFERGLSGGAHRIPRHGE
RHLDLLAAMRAAEQLADSKTTALDAWHDKHSKAFNPKLVQVFRAEDRQGLPPRHKRLRRP
QPDVEDEPPASFPLMTGFPAAPSSATFGTADQQSGRPLFRQPSAQEIDPLAAELFSSPRR
RNKRVSVSPVPTPSPPAKRDSRSTPPHVSSPARHAKPPSRPASRVSQHTETLDLSNLDSD
DEPLIPQPKKVAPGPQEPAALANTSFSIDLDDDGDLVMSDSELLAGAVIRGPSKSTSPPK
PVPAKPNGFATAGSSKATGTAVIIEDSDDEPLVAAPARPARTVSAPILPAPQPVRPAAAA
SSAFRPFVPPRPSLSQPAATTAKPASPPAAASAPRAAPSSSASFDAGDDFSILEIAEDEL
DACIAQAHAKAQQAQPPAPDVDRDRKKMPPPPVARYVVVGPSTSKAAFRPAGSSPAVPAG
GARAAPMRRLAVPDSSSSPVIAKKRLGPPRRDVEVVVEIAQRERPTEKKGKAKLKRGKEA
RVDAAHDGDEDEPVRAKKRRMGVVEDDEEEENEEAARREKKSKRRDKGKRKAREVEDEDE
DAEGHDAERQRKKVKKKDILTHKQASRFGIFDIEAVNSSASGTEASSEGYSSENSIDREF
VAATSSDVHSDDDAQQQFYRDSLATQAPPGFGTPVLFGNRAARWQERMGRGLKPIPVTPG
SQEELEREDWSYDSFVVHDDEEIEYETSSPGAPTR