Protein Info for mRNA_1062 in Rhodosporidium toruloides IFO0880

Name: 9430
Annotation: K10742 DNA2 DNA replication ATP-dependent helicase Dna2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 933 PF08696: Dna2" amino acids 1 to 160 (160 residues), 153.7 bits, see alignment E=1.8e-48 PF13604: AAA_30" amino acids 529 to 590 (62 residues), 40 bits, see alignment 1.1e-13 PF13086: AAA_11" amino acids 529 to 620 (92 residues), 53.5 bits, see alignment E=9.3e-18 PF13245: AAA_19" amino acids 534 to 594 (61 residues), 30.8 bits, see alignment 1e-10 PF13087: AAA_12" amino acids 658 to 861 (204 residues), 172.4 bits, see alignment E=2.8e-54

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (933 amino acids)

>mRNA_1062 K10742 DNA2 DNA replication ATP-dependent helicase Dna2 (Rhodosporidium toruloides IFO0880)
LLILHPDILVSSTKVADSSHCTRKAVLQEIIRTVGGSTPSLLYGNMLHSLMQSCMTEGRW
DDEYRHAKIEEVVKEYGGQLWTIDVGFEKAKEELLNRSKEFEAFAVRFVGEKPKVDAFLS
DPRAVDTARSRLAIISTLDVEDDIWSPRFGLKGKIDVSTRANVVDSVGFSRKGTAPFEIK
TGRTNAGMEHRAQTMLYTLLMSDRFDEDIDSGLLYYTQSNEVFRVQAARNEIRGLILARN
RFATFLHRRMTLTPSEDEDDALWGDVDVPVSSQVEGAELALLPPPIDDERSCKKCYVGDA
CMLYRKAVDGDEAICDDETDPLQLIYAGKTDHITPAHANFFKHWERLISLEEQELVRFKK
EIWTLQAEEREQLGRCFANMVISEVKAEDLSSKTSVHRFVYRLRPRSPPDSSLLGGSIST
NDPVVVSLETPSILAISRGFVLSLSPVDLVIGVDRSLTACPQTKGAAANELVFRVDKDEL
AAGMGRIRDNLVQLFTPGADARRRSLVVDLAAPRFRPVEEIKQAGLPSHLNDDQRQAVAK
VLTAQDYALILGMPGTGKTTTTAEIIKALAQAGKSILLTSYTHSAVDNILLKVKDAGLSI
LRLGNRDKVLPSLHPYTLSSEDYAHSLSDIDNKLLRPQIVATTSLRQVRNGAARKGGLDV
SLFKRLSDAHPNAVVNLTHQYRMNSDIMSLSNELVYSGQLKVGDERVGGRKLGVRKDLAE
SVVESWVWDIIDPDRSVIFVDTDALPARERRNGSLIDNLSEAVLVTKTVSALAGSGVDEE
EIGVISLYRQQIKLLSRQLSSHPGVEILTADRSQGRDKECIVLSLVRSNTSGNAGDLLKD
WRRINVCLTRAKSKLVIFGSRSTISHVQLMADFVRLVEAKGWVYELPAGAADVAEDVKVK
LEEDVEENKPVIRRGKGALALRSPLASDILNSL