Protein Info for mRNA_1100 in Rhodosporidium toruloides IFO0880

Name: 9468
Annotation: K14679 TRL1 tRNA ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 PF09511: RNA_lig_T4_1" amino acids 141 to 383 (243 residues), 263.8 bits, see alignment E=2.3e-82 PF08303: tRNA_lig_kinase" amino acids 485 to 643 (159 residues), 105.2 bits, see alignment E=6.4e-34 PF08302: tRNA_lig_CPD" amino acids 682 to 887 (206 residues), 87 bits, see alignment E=2.3e-28

Best Hits

Predicted SEED Role

"tRNA-splicing ligase (EC 6.5.1.3)" (EC 6.5.1.3)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.5.1.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (900 amino acids)

>mRNA_1100 K14679 TRL1 tRNA ligase (Rhodosporidium toruloides IFO0880)
MVAGYRKPALEPSPATKLVRDLVQFGQPAQPSHSLDGEREEVVVSRGKGKGKAKDLNGSN
GGASATSDADDVTARLDKLSVQGGAEGKGETPKALKKLLRSTNHTVTIPGPGGKEEKRVL
TSWKMADYAYKREPCPFPTRARGLFTEKVGKGGEEEYRIVARGYDKFFNVNEVSWTKWDA
IPQYSTGPYELTTKSNGCIILIAALTPSHIIVTSKHSVGRNANLSTEGGVSHSERGEYWL
ERHVEKVGKTKADLAKELYEKNLTAVAELCDDSFEEHVLPYPPEMTGLHLHGLNHNSPIL
NTLPSSEVASFARKFGLIPTPYTVFPSVVAVRTYCETVEKAGGVEGPDGKLTPVEGFVVR
GHRKGGSAGEAFFWKVKYDEPYLMYREWRELTRKLLASYPNLDSVSGTKIRNEESRLYLW
WVRREIQRDHEKFAPWKYGKGIIKTREEFLEWQKTPEANKARRELGQKIEMDEEERKSRR
FDRTVIVPVAVQGCGKTALGLELAHLFGWGHVQSDDFLQKKPAPHFLKAVKGLLDSKEVV
IADKNNHLAKHREDLVSLAESVSPKHTVRLVALVWPTNSPSLPRDKFHALCASRIVKRGQ
NHQTLRAGELHESILWQFLGQHEPFDQEMNAADSKFDHVIEMRAEWAQDEALRHAVEELA
KIEGVLPKGTQVPLPKNKVDEALRYANTWTTSVRKEESAQQVKQRAKQGAARYYGIAVDV
DVKALVEKHLPQSEKDDKNSLWSTLVKSSRVERKPHVTLVHRNEVELTDEAVRASKQALW
DRYSSLVDAATKSGKEQDKLAVELTLGPRLVWDGRAMSLEVSALAPKVAPKKGEAPHISL
VDGRAAHITVGTRSSDIRPVEGKYLMEIVAKGGKSTEHGGAIHQVRIGEVKAPGKLAGLS