Protein Info for mRNA_1108 in Rhodosporidium toruloides IFO0880

Name: 9476
Annotation: KOG1134 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1031 transmembrane" amino acids 31 to 52 (22 residues), see Phobius details amino acids 100 to 103 (4 residues), see Phobius details amino acids 105 to 112 (8 residues), see Phobius details amino acids 116 to 135 (20 residues), see Phobius details amino acids 180 to 200 (21 residues), see Phobius details amino acids 432 to 447 (16 residues), see Phobius details amino acids 483 to 512 (30 residues), see Phobius details amino acids 535 to 561 (27 residues), see Phobius details amino acids 579 to 600 (22 residues), see Phobius details amino acids 624 to 652 (29 residues), see Phobius details amino acids 673 to 714 (42 residues), see Phobius details amino acids 735 to 755 (21 residues), see Phobius details amino acids 761 to 781 (21 residues), see Phobius details PF13967: RSN1_TM" amino acids 31 to 202 (172 residues), 107.6 bits, see alignment E=8e-35 PF14703: PHM7_cyt" amino acids 224 to 473 (250 residues), 111.1 bits, see alignment E=1.2e-35 PF02714: RSN1_7TM" amino acids 484 to 755 (272 residues), 238.2 bits, see alignment E=1.8e-74

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1031 amino acids)

>mRNA_1108 KOG1134 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MDSYIQMLADSDQDNPGLPPGQLGKYQGPWFSTQLTLSLTVGVASFLVFCWLRRYERFKV
LYKPRTLLKGFSPHEVHDHESFFGWILPTLKTSEFVVLQLVGLDAAVLLSFLRTGFHFFL
TCSVLAFAVLVPINYRDHGTSEGVPPPMNGTSSFLPSAISSTAPLVVSTFKPHLKHGSTI
YLFSHLAFTYIFTILALVFLNRNWKRYIPLRQLFSLELAQSIPARTVMVTSLPPHLRSER
SLAEYFENIRLGEVDSSNRDRDARDSGCLAVESVVVTRAIGSMRELLERRTSALATLEKA
WTKYLGNPVPVEGKKAVSGYDREAEVETILRGPAEATDAGGEGEEQTGSDPSRNGRLIDV
DDDEQEQPEDLEAQLLSRVKSVISTPGRKRPTLRPHCFAKKVDALDYYAEQFRKADEAVR
KRRKGKFRPTGVAFVTFQTIASAQVAAQVVHYPSATEFHTELAPEPRDIHWFNLNLSASS
VFIRQVLVILTLLVLLSVWSVPVAALATLLSWETIQDVAPRLADLLGRSPRLRGFVQTTL
PSLAMVAFNNVLPMFLEALSIFRGLPARSWIELSQLKKYHISLLFTTLFVFITTSTYTLL
RDISESPAKVLDKLATTLPDSRNFFVSYVMLAGLAIMPLQLLELATVIPRLFYQMFLTST
PRDHAELNAPTSLNLGVVYPQALLIWTIGLTYSIITPLILPFATLYFGLAYLTYKYRFLF
VFYRPYESRGQAWPLAYNRVALGLLIFQVFMLGFFTVRKAFLLVVLMVPLLASTVYTIWR
LYRTYVPLSRFVNLSQACEVANGTGADDIVKLRKGHPVTRSQTHLNRGRYGHKGEGVYAV
AKNPHTDYSQPPLSEMYPGVLNTGGPARYGHPALFGALPEPWLPALAEPKETGAEVPQAV
KDALLVVDLRRGWRNLKRAAKQGIVLGGENEGESSEGGRRRPRATSWGSMPSEEDPSRAW
RGSESSAAPRPRREDLLSDEEDDLDEEDDLDEEDEHGNIPSRYSSFFPHRPGHNIHFPPT
PGNASETEDEG