Protein Info for mRNA_1111 in Rhodosporidium toruloides IFO0880

Name: 9479
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 720 transmembrane" amino acids 451 to 466 (16 residues), see Phobius details PF00172: Zn_clus" amino acids 21 to 55 (35 residues), 21.7 bits, see alignment (E = 9.1e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (720 amino acids)

>mRNA_1111 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MNSPAGSQAPRARGKRGPTATSCDACRRRRIACRRRSGDSTGPCESCEKKGLSCVSGSYG
PSRADIVKASGPSTLAGPSSVDSRLADDELAKSLGLELLMLYGDGGSDGRSMALYPLPIF
DYASLATRFKTRGGRLSELSRDDQLVCRIIFASAAPHWQSTASATPETRTALSRQLLSAA
QESADMLGIWRKPGSTSTKSLLMLQQIMNGGDIASDESLICLSTCVVQIKLLVESAAPKG
RSAMLVDGGTAMVWNAGLFDAAASIERKKEPYFSASDYSLMFGYAGKLPSAELLETALFA
DAWSVTVCALFGLRAYLDVAHRVATLLMGTKSMPQALENEADFEARWRDLDKIYDWGSMA
AQLALRGDQGDAFARANLELYCNFAYGPAIAAEFAILQHLEGLDRQGLARAYDLADQISP
SLLSTARARFPVRLCRYLRDIRTTDGHNFVAISAGTMISVSRVFAIVRCFLQTSAWDMSL
HASPVDKLASLNYLISALDLIAQRYPGTPGLAAVREEAGAERLALVMLTGTSPARLPSDI
NLLSRPSLGRLNAWTFAHDVSQTAPLLLHQIVDALYKDDPPDAGIDSGTFDQDSFISTEA
FASNPWPTADHTLSDLYAGPSALTAEAPGVTVETQALLDLLNDTANPASPSSAFLPTSFP
FSAAAAAPPATLDQANEPPFSTAFPSPSFPPAAQNPFGTSTSNGAGNFDWFDAAGDFGAT