Protein Info for mRNA_1118 in Rhodosporidium toruloides IFO0880

Name: 9486
Annotation: HMMPfam-RTA1 like protein-PF04479

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 transmembrane" amino acids 64 to 85 (22 residues), see Phobius details amino acids 96 to 113 (18 residues), see Phobius details amino acids 126 to 149 (24 residues), see Phobius details amino acids 171 to 193 (23 residues), see Phobius details amino acids 205 to 228 (24 residues), see Phobius details amino acids 248 to 266 (19 residues), see Phobius details amino acids 278 to 300 (23 residues), see Phobius details PF04479: RTA1" amino acids 103 to 309 (207 residues), 112.9 bits, see alignment E=8.2e-37

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (348 amino acids)

>mRNA_1118 HMMPfam-RTA1 like protein-PF04479 (Rhodosporidium toruloides IFO0880)
MHYTSILPCNETTAAIIQASLDVPTQELATSGAAYWASAACLYSSNSTLTDQAWKTWVRI
NNYGYIPSAAAGIFFIAAFGLSFLLHAYQLFRSRRWLYICTEVGLVLELWGWGTRYHAAE
DITTGYVFQLAGLTCAPTMFATNLYCLFTQFAATQDPAILRELGARKTQRWLIIVEVLAI
AVQVGGASLAATAGGKSLFDIGCNIMLAGIILQLVLTVVFLAAVVAYFTRLRRATEERVL
NVRNRIGFLFWGVVVMDALIIIRGAYRTAELTGGIWGPIATSQIALILGDAVPMLLVVYG
LNATHTMWTVVPFERAKEHESTDIGLVQRRTSNGSSLEKADAAYLGGC