Protein Info for mRNA_1143 in Rhodosporidium toruloides IFO0880

Name: 9511
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1353 PF00172: Zn_clus" amino acids 566 to 596 (31 residues), 23.9 bits, see alignment (E = 1.9e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1353 amino acids)

>mRNA_1143 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MAHGPGNLPDWPPEADPLAEPGEPLLSSGSDDTVGKGSAPSSARIAADAATQTGQGSGAR
DVGSLDFGFPFRDRQQADPAHLARIFGSEPAQQYSGYSPSHHQHAQAPTPPLSTRPGALP
THSPSQRSQHLALPRQTQQMQFPPSDFTHPSFWLGQQGQGGPAADGVAFGSPSAPSQGAG
GAGSGGVSLSMLEMGSGANGTNGDGDELSGTGLGLQGSSFLPPHPSSSQMNVDPGSMSWP
SGLPSSSTSSNPSDNYPPAAPTSTRGSKRPRHDHHNASASSLPGASSAYLPHAPHPQVYH
SNTASASGVSFSTHPALVQHEHPLPTHFNKSPEQLAHLGDDLARTSDPQDDHFTLPTPGS
SFSAPTASELAQRRFRAGGRAGLHAGSVGSASGSGSRSGSASTGSGGASRAGSGSAPGSG
GASSAEGSRKGSEPSQASGSRSGSTSFSGASRSGSGSGSHASGSGSGSVSGPTMLAHQVF
PSPAMSSTNGNGAGVGNGAGEWSGAPGTGTIYEDLAGERRTPSAASAQSEDEPMAGPSTV
GAGGINVRDMGKVVGEGKKIVQKADKSCKKCRERRVRCDRAWPTCSRCKKRRETCEWTEV
TNVDDIEEGGDAERIAELQAKVASLERQLKAANVSIKSTSALPAPPVPSSQSQPSLEASP
PDSNKSGPASLGAGFESVQALVHELWSTRLQLKDAEGEVLIQYLARQTTAVLDLGRANVN
WRLGEPILARSLTCHLLDAALHACCSKLPGIQPLAERIDEYKRNIDFLNPPQQCAVAVLC
ALGARASPHSQLLGIATVHLQDGTPSPPLYLYAGERREMACRQLEQRARELCWSHGFFNE
PDLAQLDSMVGLVQLLIFELPSLLQDEEVLPKQSRFFCRAAIGAYFDIRHDALERGDRTS
RDPRIGPGTALFLADASISSACGRPSYITTGELDQYIISDGVKIPDFPGSELGDELSQIL
QRPLTQDKLVSALSTTCLWVAGCQRLFATLSTGRRPGVESTLPLLKNLWKLIDKVHNAIQ
ELQQLFVSLSPQEVEGMGDDPFGLEHYVLMGVRYDSLLVDLVNLQHVYLMRNRNTPGVWN
ETEDDPLLHAMREESILRVRKCLKLAAFYAQLYLQSQDKHLVHHMLMQLEMLPEWSIWAN
QRINSPGGPTSQEYEVTEGELDWFQQALELASYYNPKAAHRLAEFSRSRSHYSQHPQRGV
EELLRGAAHPNPMIALQQQQQPLIEQQLSQNPRFFYDLPPHDVASLQHMSPNDDPQRFYN
VAAAEPFVPSPNQLYVFNNYGVAADQGRLLSDQPPVPSLDFVQGHFNGQNWMAMSPPIQE
RNSMQKEYERAGERLGGDSPEWMRHAGRSEEAS