Protein Info for mRNA_1157 in Rhodosporidium toruloides IFO0880

Name: 9525
Annotation: K14818 SQT1 ribosome assembly protein SQT1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 443 PF00400: WD40" amino acids 126 to 162 (37 residues), 34.5 bits, see alignment 2.7e-12 amino acids 184 to 214 (31 residues), 21 bits, see alignment (E = 4.8e-08) amino acids 218 to 256 (39 residues), 30.2 bits, see alignment 6e-11 amino acids 367 to 399 (33 residues), 29 bits, see alignment (E = 1.4e-10) amino acids 403 to 438 (36 residues), 22.7 bits, see alignment 1.5e-08 PF12894: ANAPC4_WD40" amino acids 187 to 233 (47 residues), 23.2 bits, see alignment 7e-09

Best Hits

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (443 amino acids)

>mRNA_1157 K14818 SQT1 ribosome assembly protein SQT1 (Rhodosporidium toruloides IFO0880)
MSDEIVQPVPPAPGHEDEEGPEFLTEDDVLEVEEVGGDDQMAVESDDDDEMDGEDDADGQ
GTSGERDDAMDMLDNGLDDSVAVAQLHHAEEGAVFCLAIHPFAATLAVSGGEDDQAYVFR
TDTGAQVAQLSGHTDSVTSVGWSHDGGLVATGGMDGKVRVWKVRRPSSDMPWEEAGWEFL
IGLEGPDEVNWLDWHPKGNVLLAGGADGTVWLWNLPSGETMHVLSGHTTPVTCGRFTPDG
KKILTGSEDSTLILWDPRTGQPVHKLSPSDARFRLEGGINCLAINPASTVAVLGGAEGGL
RAVNLVQGSVLAQMEGHEEGASIEMVAFNEIPTIGGASGASVTVIVSVGTDGRVCTWEAS
GFRLRNTGTHEDAVTSLSFSPHTPTFLTGSADKTLKLWDYRTGSCLRTLLGNKDVVHAVS
VSRDGRVAVSGSEDGSVRTFRLD