Protein Info for mRNA_1172 in Rhodosporidium toruloides IFO0880

Name: 9540
Annotation: KOG2277 S-M checkpoint control protein CID1 and related nucleotidyltransferases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 776 PF03828: PAP_assoc" amino acids 487 to 521 (35 residues), 27.2 bits, see alignment (E = 1.8e-10)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (776 amino acids)

>mRNA_1172 KOG2277 S-M checkpoint control protein CID1 and related nucleotidyltransferases (Rhodosporidium toruloides IFO0880)
MSAPPPAFQTTESLWPLDAAPQQSSSDPKKPRNRHRPRRKPQNAADSSSSAAASAPANLP
FSGPRATDTSSSQHSAPGPSIRGSGRGRGRGGFASAGGRGGAAMAMSTSARTENWRPASA
AASSAEDVGVPVSRTPFARTTRGGKAPIDTNWRRDASSGPGSSNRSSSKERPAPGAKKGG
KKGKKRKMTTAEKNSILLNEVEKATGPDADLAKEIMKLYELQRPSKAAVAAREHLIKELE
HWLNGERFKWGHPHNPYSHRLRIEPFGSARFGLGTSTSDLDLCLLDPYRPEGFSEKYFSS
RNPTLKDLPDIYNMRRIARSLERANLSDVRAIASAAVPICKFKVEMDGHEIEVDLNTNER
LGVYNSRLINSYCNLHPLVRPLSVFIKFWAKQRGLNNPAGTPTTFSSYTLILLVISYLQH
LKILPCLQDPDLIAQAGIPQKLIFTTPKTHARNGRRKGEILASIGWNVTFVEHDAPPKEY
EPSTADLLQLARGFFHYYADEFDMENYIVSVWRGQPLARRRPYKPEEELAQDAPVGEQPN
EEDLVLAALRETDEAEPKLQATQVDVDGDAQSAAGRPPRPDSRSSEPMEYGEFEEPERWE
RNLLVVQDPFILNRNPPGNVHPDWVDEFRFQMRRARGLIDQKAPLKEICASIESETHYIP
LAIRRAAERTARAKKARREKRAEKRDRALQRKVVAAAAIAASAPALESAEADDVAVDGDG
ASGDEGSLESENDEVLEADKRSLAKDEPEWSDDEPFVFRNHTAFFEIGEGAEARKK