Protein Info for mRNA_1174 in Rhodosporidium toruloides IFO0880

Name: 9542
Annotation: K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 388 PF13489: Methyltransf_23" amino acids 85 to 356 (272 residues), 44.2 bits, see alignment E=5.9e-15 PF13847: Methyltransf_31" amino acids 97 to 142 (46 residues), 35.1 bits, see alignment 3.3e-12 PF13649: Methyltransf_25" amino acids 102 to 160 (59 residues), 32.8 bits, see alignment E=2.8e-11 PF08241: Methyltransf_11" amino acids 102 to 151 (50 residues), 25.5 bits, see alignment 5.2e-09 PF06859: Bin3" amino acids 265 to 380 (116 residues), 110.4 bits, see alignment E=2.2e-35

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (388 amino acids)

>mRNA_1174 K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme (Rhodosporidium toruloides IFO0880)
MASESAPVAKRQRFGILDSRKPDLNPSAPHPPDLSLLPTSTSTGSHTRRQTASSDYKTKR
KPRTAPSGNYQGYYERRKTARDEPDERLALIPQDWLKGKKLLDVGCNDGAVSVELAQRFG
PAKVVGVDIDPSLIRQAKTFADTAWSRQAPLERLIAEAQQIQRQHSSRSSQSPALSSLLS
DGAYSAFASTDPHYFPVSLPRMFGNLPQPRQLVTIVDGETGDWQAGQRRGKRKESSTEIR
AFPENLQFVAADWVNETIEPDRDGYDVIIAFSVTKWIHLSGLNPALLTFFRRCFDCLRPG
GKLILEPQPFSTYARNVKMTPELQENYDRLKEGAEKGWRAEEGDFERVLLELVGFEKREL
LGETGKIGSTFRRPVEVYTKRGSSSTAI