Protein Info for mRNA_1191 in Rhodosporidium toruloides IFO0880

Name: 9559
Annotation: KOG3033 Predicted PhzC/PhzF-type epimerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 TIGR00654: phenazine biosynthesis protein, PhzF family" amino acids 5 to 312 (308 residues), 109.3 bits, see alignment E=1.2e-35 PF02567: PhzC-PhzF" amino acids 10 to 309 (300 residues), 174.9 bits, see alignment E=1.3e-55

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (313 amino acids)

>mRNA_1191 KOG3033 Predicted PhzC/PhzF-type epimerase (Rhodosporidium toruloides IFO0880)
MTRTHPFQTVDAFTSSPFSGNPAAVLIFTSSPEDQQLAKDDDLMQKIAAEFNLAETAFCR
ALVEGKTEGGDEGSPEYEIRWRTPTLEVPLCGHATLASAHVLFTTYHPTATSLTFRTLHS
GTLRALRNKSDNSISLDFPAASLLTLEEGHRRRPKIVDAVKAATGLGEESVGKVAWWDAW
NGAVVELDAGVDLANLKVDIAATATVGDILLLTQPAPASSGFDIYSRVFARPVGIDEDPV
TGAAHTALAVFYLLDPSTASRLPHSSQALSSSTLRAKQVSKRGGELVVVLDQEIKRVELR
GQARRVMKGEIEL