Protein Info for mRNA_1197 in Rhodosporidium toruloides IFO0880

Name: 9565
Annotation: KOG2385 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 718 transmembrane" amino acids 313 to 335 (23 residues), see Phobius details amino acids 346 to 372 (27 residues), see Phobius details amino acids 475 to 490 (16 residues), see Phobius details amino acids 528 to 547 (20 residues), see Phobius details PF05277: DUF726" amino acids 314 to 647 (334 residues), 206 bits, see alignment E=4e-65

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (718 amino acids)

>mRNA_1197 KOG2385 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MSARDDQLESHVATFDPGLKLFVAIAAKISTLHALAGRYTQHLTLEDLSPPSTPPAESPS
PSGSSTPSSSSQRTPPHGPKPWDTLLAQRQLDAEQERVKVLMKATIAQSVHWLTLVCAHF
EVEMAQLPEEPGEGTRLETVLDDGPAHVGEKVEKEEEGEEERRRRREKLEWEVVWELVLV
SLGLVSAGQQAEEPDQKKKSGGVNAAAAKVGGLFSSSSSKETPAKPDDKGALPPLNYTAL
SRSLVICTADILGIPSQTVQDVEHTIAQFLYFQLQAANEEDKKAGEKKGDVEWDEAAKEY
REKAARKNSTLKWAATGAGFILGGVAIGLTGGLAAPALAPVLAGTFGIAAFSGAGGAVLI
GTLLGLGGGGLAGYRTHRRMKGLEDVRFEPIKDEDAHEMPQIPSLTATIVASGFLLDLKD
SVDPWRPYVKSSRVDAYALKADPQTFLEAGRSLDKFVKNKLVTMGGIEVIKRTALAAVYA
GVALPLTVFNSATTAFDSDFTRCREKAKKAGVLLAEILEKEVQGKRPVVLIGYGPGASLI
FSCLLHLHELQLGHLVYSAILISLPEAPSPVKWASARSVVAHELVNVWSGNDFVLGIAAR
LYTLSTRIAGLRPARVEGITDIDASDLLTAGHLDLRHKLPQILERVTSKRDEQPAPAPPE
KEMEGLSVVEKKARAREDVSARADAVEGEGTQEAKEQAEKLKAQVEEKAGEADGGGKA