Protein Info for mRNA_1217 in Rhodosporidium toruloides IFO0880
Name: 9585
Annotation: K10580 UBE2N, BLU, UBC13 ubiquitin-conjugating enzyme E2 N
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 81% identical to UBE2N_DICDI: Probable ubiquitin-conjugating enzyme E2 N (ube2n) from Dictyostelium discoideum
KEGG orthology group: K10580, ubiquitin-conjugating enzyme E2 N [EC: 6.3.2.19] (inferred from 84% identity to lbc:LACBIDRAFT_174313)MetaCyc: 52% identical to ubiquitin-conjugating enzyme E2D2 (Homo sapiens)
RXN-15556 [EC: 2.3.2.23]
Predicted SEED Role
No annotation
MetaCyc Pathways
- protein ubiquitination (3/9 steps found)
Isozymes
Compare fitness of predicted isozymes for: 6.3.2.19
Use Curated BLAST to search for 2.3.2.23 or 6.3.2.19
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (152 amino acids)
>mRNA_1217 K10580 UBE2N, BLU, UBC13 ubiquitin-conjugating enzyme E2 N (Rhodosporidium toruloides IFO0880) MSSAAALPKRIIKETQRLVSDSPPGISATPHEDNLRYFDVVISGPDSSPFEGGKFKLELF LPDDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP DDPLANDVAAHWKENEKDAMRVSREWTQKFAQ