Protein Info for mRNA_1220 in Rhodosporidium toruloides IFO0880

Name: 9588
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 transmembrane" amino acids 9 to 28 (20 residues), see Phobius details amino acids 64 to 84 (21 residues), see Phobius details amino acids 91 to 110 (20 residues), see Phobius details amino acids 116 to 137 (22 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details amino acids 181 to 202 (22 residues), see Phobius details amino acids 272 to 293 (22 residues), see Phobius details amino acids 306 to 326 (21 residues), see Phobius details amino acids 335 to 357 (23 residues), see Phobius details amino acids 369 to 391 (23 residues), see Phobius details amino acids 408 to 426 (19 residues), see Phobius details amino acids 439 to 458 (20 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 10 to 469 (460 residues), 400.6 bits, see alignment E=4.8e-124 PF00083: Sugar_tr" amino acids 18 to 472 (455 residues), 403.7 bits, see alignment E=1.1e-124 PF07690: MFS_1" amino acids 22 to 407 (386 residues), 53.5 bits, see alignment E=1.9e-18

Best Hits

KEGG orthology group: None (inferred from 55% identity to cne:CNM02570)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (559 amino acids)

>mRNA_1220 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MEVEQRAPIHMALLMSCFAGFGGFIYGYDTGYISGVKEMPYFRQLFGELGANGKYYLPSY
RDSLITSILSAGTFVGALASYPIGDFLGRRYGIMAFLFLFSIGVACQTGGTTLRTFVVGR
IFAGLGIGGTSCLVPVYQSETAPKHLRGAVVGGYQLLITVGLFIAAVIVNGTKNRMDISC
YAIPIGLQFIWVAILVVGLAILPESPRYLIAAGRDEAAQDALSWILRAPVESDIVGEHYA
EIAASVHHVRSLGGTSYADCFSMMNRNRVRSWAGIGLQALQQLVGVNFIFYYGTTFFQNS
GIRDPFVITIATNVVNVGSTIPGLWLTDKAGRRTMLLVGAVGMAVCHFIVAGCSTALSQD
NEAGQKVLIGFVCVFIAFFAATWGPIAWVVTSEIYATATRAKQMSMSVASNWLFNFGIGY
ATPYLVNTGKGNAGLQGKVFFIWGGVSCIAILFVYFCIPETKGLSLEQIDILYRLTGNAI
RATKIRRELLERDIQDEDTAAYFYAFKEQHLGSSLHELEQHQGSSSDPQQPQHHQVQLQQ
DELAPVESPAVKMRDLNEA