Protein Info for mRNA_1222 in Rhodosporidium toruloides IFO0880

Name: 9590
Annotation: BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1320 transmembrane" amino acids 522 to 547 (26 residues), see Phobius details amino acids 578 to 599 (22 residues), see Phobius details amino acids 686 to 704 (19 residues), see Phobius details amino acids 741 to 762 (22 residues), see Phobius details amino acids 827 to 849 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1320 amino acids)

>mRNA_1222 BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M... (Rhodosporidium toruloides IFO0880)
MAHPKTHFDLPDPRSSYTSSIPLVPAGRSSGQYSSPIGPSTTYPAPPGLSPRSSPPISRI
SPRPERPDVPVTPQLGSTPNMTDTATFVTSSLAPPEPQPPRPRRPSRPNEALMFNSPVPL
LPAFVPSTSEPSPPSESDLSPGALDFPAPPLPPTATAPTSPRPASAFSRFSSSYRKPVPK
FIPTPPRQASLSISSARAHGEEVDEGGSAGRLSVGGFEALLQRPAAIEGRLGEVADEEKG
QVIWSPRIHLGLDPEGVEAREERRKWDEQRKVSAASGSAGLGVFETAAEADLGDLAGFVP
ATDRLAPPPQQTNPDLLISPRGSRRRVRGVTTFEPALASHGDADFPRTPPRTATPGARRY
VTPRSARSKRSRMTSYEPQYGEEDDVDLDDVHEGPKLRRGSKRLSELDSVVDYGDGTGER
GEMMAPTAPSPTRRPSLFSLRRKSKSARSPAPPVPSSHTRGRSAPGTFEVVVHDSDSDVD
ARLHQPNDGDWEKVRRETTCRPERMDWSMVEYGGWFQRLLHLLYPFAIFAHVPVTLFLDY
NLIYILAQLALYPSVPPTQNLSARALVNVPTIQPSTGWWVALAVYSTCTFIWFFGVFIWR
DLLCGFFARWRGVGAGGKNVEIERIYQGAASYNLACLRSYGVFSFLWRVRLAGLLPQTAL
GRSVDGTSRLDGIKETCQWYRQNWPTVLLLLPRAGLTCTVILLYNTTAYGPTAAAVATSR
DSAYFATDGTLSPFAFGVLMTNAVWAAWRLVLVVAAAVGLWLPDSSCLRRRSAAPSAFVH
PSREHLAIALPDSPVVGRTDQTHASSSHRPSASFSDWRTRRQRRIRCAILACLGSTPLSI
ASTTFSPFLAKSPYVLGYSSSAYPDEKKETIYDDEVHQQVPAGRKSARPSAEEQRPDFTV
QAIDWEQPRESAAQRYAAAARQPRKFWSSASNYVVPHPKTKLSPIISLSPATPSPPRFEA
QTSGIDGRRASTLTATPQAGAAGGANLHRRVRSLPVEQEHLSPVPQHEVQFSPRPLPTVK
TLLAQGQRNDRPNEQYSRPQLVSQFSAISERPSSSRSMPLGEIDPNAIRRDSSTSSFASP
MPSYFPHRPSALHRPGNGNRIPSDENRSALLQTHLARGAAERQRLSTRLLDEVNRIQDEE
ALLREETLREGGLHRNSQLSSTEGGDSFETAQAGPPSDVAGDARRGSALSTVTASSAVSQ
PTSVGGRSESSTLRGAVRTPEPAYRLRSTTPLGTSADQPTVGRESAAAAEEATVENESRL
EPFRLSHQSNADTLSLSAYGSPRLEQGEGTHWQGMEGDEQERESKEQMQVETVERAEEAK