Protein Info for mRNA_1228 in Rhodosporidium toruloides IFO0880

Name: 9596
Annotation: K00693 GYS glycogen synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 755 PF05693: Glycogen_syn" amino acids 14 to 667 (654 residues), 1107.6 bits, see alignment E=0 PF08323: Glyco_transf_5" amino acids 153 to 264 (112 residues), 24.1 bits, see alignment E=4.2e-09

Best Hits

KEGG orthology group: K00693, glycogen(starch) synthase [EC: 2.4.1.11] (inferred from 79% identity to uma:UM01009.1)

Predicted SEED Role

No annotation

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.4.1.11

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (755 amino acids)

>mRNA_1228 K00693 GYS glycogen synthase (Rhodosporidium toruloides IFO0880)
MAQQRSVHDHLLFEVAWEVANKVGGIYTVIKTKAPVTCAEYGDRYTLMGPLSYKSAPMEV
EAIDWEKPTPLNEDGTPTTTSVANAALVGTLSSMRDRGVKFLYGRWLIEGGPKVLLFDTG
SVWNRLDEWKTDLWNLAGIPTPANDTETNETVLLGYLVAWFLGEFSARERSRAIVAHLHE
WQAGLAIPLCRKRHIDVTTVFTTHATLLGRYLCAGSVDFYNNLAYFDVDHEAGKRGIYHR
YCIERSAAHCADVFTTVSHITAYEAEHLLKRKPDGVTPNGLNVTKFSAMHEFQNLHAVSK
QKINDFIRGHFYGHYDFDLDNTLYFFTAGRYEYRNKGLDMYIESLARLNHRLQQSGTKQT
VVAFIISPAATHSYTIEALKGQAVTKQLRDTVTEIQNRIGARLFERTARYNGEHGTEVPD
PAELLSTEDKILLKRRVFALRRNSLPPVVTHNMADDANDPILNQVRRVQLFNRSSDRVKI
IFHPEFLNANNPILGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNLSGFG
GFMEDLLEDSQDYGIYIVDRRMKSVEDSVNQLTDQMLSFCQKTRRQRINQRNRTERLSDL
LDWKRMGLEYAKARQLALRRAYPDAFEDDDFDFESGQVRLPRPLSAPASPRFTTGVVTPG
EFATLTEEMQGLGTSDYMGAQQTWESLIRGKDEEEEESGYPFPLVLKRKGGPGSVSGTTS
GLTTPGGTVPNGRGKSLSEHDLAQADQALSNHSTQ