Protein Info for mRNA_1230 in Rhodosporidium toruloides IFO0880

Name: 9598
Annotation: K03267 ERF3, GSPT peptide chain release factor subunit 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 724 PF00009: GTP_EFTU" amino acids 280 to 493 (214 residues), 154.1 bits, see alignment E=5.1e-49 PF03144: GTP_EFTU_D2" amino acids 525 to 592 (68 residues), 31 bits, see alignment E=4.2e-11 PF03143: GTP_EFTU_D3" amino acids 598 to 705 (108 residues), 114 bits, see alignment E=6.8e-37

Best Hits

KEGG orthology group: K03267, peptide chain release factor subunit 3 (inferred from 50% identity to aor:AOR_1_486154)

Predicted SEED Role

"Eukaryotic peptide chain release factor GTP-binding subunit" in subsystem Translation elongation factors eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (724 amino acids)

>mRNA_1230 K03267 ERF3, GSPT peptide chain release factor subunit 3 (Rhodosporidium toruloides IFO0880)
MSGGFNPNANTFNPNAGSFVPGGAPPFQPGQPYNPYGAPPQQGGNPADYYNQYAGGYGGY
GAPAGQYGYAPQGYGQAPAGYGAQDPFAARYNNGGFPGQQQQQRPPQQPETRVYEPPVRQ
PAASSAPFVRPSSDPNAPPPSKPPTMSLKIGGSSSSIPAPNPDAKPATVSLKIGGGSKAS
TASSSSAAASKNATPATSSKASTPAASKPGTPVAGKPAAAAAAEKKADAAQAKKEDKEKK
VEAKKVEEAKKDAVEAEIQAVADQEALEDLYGVEDAKDVKPHMNIVFIGHVDAGKSTMGG
NILYLCGMVDKRTLEKYEREAKEAGRESWYLSWALDSTSQEREKGKTVEVGRAYFETDVR
RYTILDAPGHKNFVPSMISGAAQADVAVLVISARKGEFETGFEKGGQTREHAMLVKTAGV
QKLVVVVNKMDDPTVNWDKARYDEIVTKLSPFLKGTGYNMKTDVTFIPVSGFTGANIKEP
VDRKVAPWVEGTSLLKFLDDMPLMDRKNNAPLMMPISEKYGDMGCVVVGKVESGKVRKNQ
DLLLMPNKTPVQVAAIFNEMEEEVSLALCGDNVRIRLRGIEDTDVNVGFVLTDPKKPVSV
VTQFEAQLVILDTKNIITAGYSAVMHVHTASEEVTLSALLNYYDKKTGRKSRRPPQFAKK
GMKIIARIDVAGPISLEKFSEYPQLGRFTLRDEGKTIAIGKVTKTQQAISEEAPDVAKLD
INAE