Protein Info for mRNA_1233 in Rhodosporidium toruloides IFO0880

Name: 9601
Annotation: KOG1502 Flavonol reductase/cinnamoyl-CoA reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF04321: RmlD_sub_bind" amino acids 1 to 254 (254 residues), 37.2 bits, see alignment E=6.5e-13 PF05368: NmrA" amino acids 3 to 72 (70 residues), 45.2 bits, see alignment E=3.1e-15 PF01370: Epimerase" amino acids 3 to 223 (221 residues), 73.7 bits, see alignment E=5.8e-24 PF16363: GDP_Man_Dehyd" amino acids 4 to 72 (69 residues), 27.4 bits, see alignment E=8.3e-10 PF01073: 3Beta_HSD" amino acids 5 to 82 (78 residues), 28.2 bits, see alignment E=3.4e-10 PF13460: NAD_binding_10" amino acids 7 to 84 (78 residues), 50 bits, see alignment E=1.3e-16 PF02254: TrkA_N" amino acids 10 to 74 (65 residues), 29.7 bits, see alignment E=2.4e-10

Best Hits

KEGG orthology group: None (inferred from 50% identity to rec:RHECIAT_CH0002757)

Predicted SEED Role

"Nucleoside-diphosphate-sugar epimerases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (301 amino acids)

>mRNA_1233 KOG1502 Flavonol reductase/cinnamoyl-CoA reductase (Rhodosporidium toruloides IFO0880)
MLVFVTGASGFVGTSVTKELLANGHQVLGLARSPESAKKLRDLGAQVVEGSMTDHELVKE
TVKKADGVIHLAFNHDFSRYKENCVEDGDLVRAMGSVMVGTDKPLVVTSGTGVVLGLPDR
KADSPFKEDDPYPLSADWMHRMHSELPTYELAKQGVRAMVVRLTPTVHGAGDKGFIPRFI
AKARESGVAAYVEDGANVWPAVHRDDAAVVFRLALEKGTAGSAYHAVAESGIPFKDIAGV
IGKNLNVPVKSISQEEAGPHFGFLGIFAGLSNLTSSEKTKAELGWAPKQINLLEDMEQSY
F