Protein Info for mRNA_1245 in Rhodosporidium toruloides IFO0880

Name: 9613
Annotation: HMMPfam-Magnesium transporter NIPA-PF05653,SUPERFAMILY--SSF103481

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 transmembrane" amino acids 25 to 45 (21 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 97 to 117 (21 residues), see Phobius details amino acids 124 to 143 (20 residues), see Phobius details amino acids 163 to 180 (18 residues), see Phobius details amino acids 192 to 214 (23 residues), see Phobius details amino acids 229 to 249 (21 residues), see Phobius details amino acids 261 to 282 (22 residues), see Phobius details amino acids 291 to 312 (22 residues), see Phobius details PF05653: Mg_trans_NIPA" amino acids 23 to 313 (291 residues), 330.1 bits, see alignment E=5.6e-103

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (415 amino acids)

>mRNA_1245 HMMPfam-Magnesium transporter NIPA-PF05653,SUPERFAMILY--SSF103481 (Rhodosporidium toruloides IFO0880)
MDVTLQATAAAAEGAVTSFNPNDKYIGLALAISSSAAIGTSFIITKKGLISAADSHDGFS
SESYSYLKNGLWWAGMLTMVVGEVANFAAYTFAPPALVTPLGALSVLVGAVLAAIFLGER
LGKIGISGCSLCLVGSIIVVLHAPEDKDIATVDEILEYALQPGFMFYAFFVTCFSLYMIY
KVAPKHGNKNPLVYLSICSLVGSISVMAVKGLGIALKLTFAGNNQLWRAGTWIFAITVAG
CIATQLNFFNRALDLFPTNVVNPLYFSLFSSATLVASIILFHGLNTSGASQTVSLICGFY
TISLGVYLLNLARGETEVRSLRHSLGDQRHSLLEQSNRLSLASDCEGNERGPDARNSTSM
YRAGGATVGGVAPIFDYDETAGKGRDEHMRMERFALRNDDSDDEENEATGRYQRV