Protein Info for mRNA_1248 in Rhodosporidium toruloides IFO0880

Name: 9616
Annotation: KOG1289 Amino acid transporters

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 924 transmembrane" amino acids 326 to 350 (25 residues), see Phobius details amino acids 357 to 375 (19 residues), see Phobius details amino acids 381 to 397 (17 residues), see Phobius details amino acids 409 to 431 (23 residues), see Phobius details amino acids 449 to 469 (21 residues), see Phobius details amino acids 478 to 499 (22 residues), see Phobius details amino acids 526 to 546 (21 residues), see Phobius details amino acids 560 to 584 (25 residues), see Phobius details amino acids 608 to 630 (23 residues), see Phobius details amino acids 662 to 686 (25 residues), see Phobius details amino acids 692 to 711 (20 residues), see Phobius details amino acids 732 to 754 (23 residues), see Phobius details amino acids 761 to 782 (22 residues), see Phobius details PF13520: AA_permease_2" amino acids 325 to 770 (446 residues), 100 bits, see alignment E=1.4e-32 PF00324: AA_permease" amino acids 333 to 773 (441 residues), 69.1 bits, see alignment E=3e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (924 amino acids)

>mRNA_1248 KOG1289 Amino acid transporters (Rhodosporidium toruloides IFO0880)
MTLAVHPRDDPPPPPSLRPSTSRARPTPPHPQRGDKAAGDSHPRGVHGDSSAATGHSLKG
KEREWSIELAVVERDGSRRVLETNGPAEGAGTADGAREGVDGAAGMADGDSDASHASERP
SSRSSALHGDPSASQDGRTASTSSSTPPPAAEPASKPSRPPLQSILKRPQPARTPSTSSH
HLAFSPAVSSSAEGPITTPPSAYLPLPPASSPSHLEPTALALGPPSPDSFESKGKSSPSS
PTLPHAHAHTHGVLFSTPGTTTSVLPLSSPSHGSHYSHDPDGPVDPTSTFKSWKSSIMGR
RSGLYDKKRLAALGFDEELSRDYDFFASWGISLCNIGGLPGTVLGVLTALEAGGGSMYAI
AWPLSGLFMISLAAVLGEMASTWPVAGAMFTWVFRLCRSKKSLNPWARYASWVVGSLLLC
SHVLLQIVVTWQFAHIILGVVGLWTERNYSFWVTVAICWGTLCFSALVVSSRLSRSPWLW
RVCGFLIVAFFLIINIILLTKSERIFSAKYVFASYRNSTGFTSKSYVYMIGWVLTCVATG
MEASAHMAEDTKRPSRTVPLAMFWSVAATYAMGWVSICVLLATMNIDGADPALQPSIALI
ANSIPRKYTAVILICVVISLLFQNVAQLLATSRYIWALSRESALPFSNFFRRLSKTNRTP
TAAIWVTWAIACPALLFLAINMSIIATTLLEGAGITCTASYVAPILLYLVCDRDVLRGDG
RAKWTLRGASKPLAVPVALFLLVFIVTMCLPTGYPVTSLNVSYASAMLIGVLLLSSTAWV
LYGNSHYAGPIKTTTRWTIGAEVDLPSTSSQGGPGGTKKKSTGHAHVTTSAHHGRTAHVW
ATSGTDGSGEWTSTETGGPGREVHGVRTGETGVSTTMTGSEYTSEYMSEEGSSDEEDEGS
RSPSRSRSRDRGSRRQVDEERSIG