Protein Info for mRNA_1255 in Rhodosporidium toruloides IFO0880

Name: 9623
Annotation: KOG1808 AAA ATPase containing von Willebrand factor type A (vWA) domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1467 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF07728: AAA_5" amino acids 97 to 235 (139 residues), 91.4 bits, see alignment E=2.6e-30 amino acids 509 to 643 (135 residues), 33.7 bits, see alignment E=1.8e-12 amino acids 824 to 966 (143 residues), 90.2 bits, see alignment E=6.4e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1467 amino acids)

>mRNA_1255 KOG1808 AAA ATPase containing von Willebrand factor type A (vWA) domain (Rhodosporidium toruloides IFO0880)
MLLRRLARMAPSTKAAADRLAALNRSFASASPASLRLEERPLLGHLTLDGLRLPVREVTK
EDDRARLPREDLLLDASDPSVQRDLAWLMQKWDLRQDVFLLSSPGLYTRRLALTFLHLLN
TPFEIVSLHRDVGESELKQGREIREGGHLEYTDSGAVRAAKEGKVLILDGIERVERGVLP
LLNNLLEYREMNLEDGTHIVSAARYDLMVKQNEDTTSFIPAHPDFRIIALGVPVRAYRPF
LHAVLVPLAYVDGWTAPYSGLPIDPPFRSRFQARYVDPVEAAKVLARQELNKPCWFKVAQ
HHVRSLLMESRPAGAKMASGITTDSKTEVPLFPQTTLVKLARFLAVFPPPSDDHLVTPSD
LFSLLLVAHPTLAYSGPAARRALETALVGAGFGSWCEGISDIDFVAEVAQRETGIFGWRL
VSISPAAEGKDQAKLTFARDGCADVVVPVACGPLPFAPFPPAESEEVRITPRFTHLLTSL
FQLHALSTFDISFVPSSASVQSSSASTSLVLQTFSSLLGYELEAIHLYKELGGRELWMRR
VVGGTSGGVTGWEPAPLVKGAKAGRLVWLDGIDTIGATFGSLSRLFGDRQGELWEGKRLT
VQEKEKEAKADSTNSILDYIHPSFRIVTTSTKAAAATEWLTEEVASNLVSLSTVPMPLAE
ERALLLAVGCPTSLVDHLELFAQRYREHTSVAGNKSRRLGTSTLARIAKRLARHPHENLR
TLLHRALLLDFLPNTEREQVSDLMDEVGLQEEPVSTLPPVEVTDTTLVFRSDLGDEHEYD
LARFDISQDPTGASHVPHAEGYHHNAQQTRYIRDIGIDLSVGEHVLLLGNQGTGKNRITD
QLLQLLGRPREYIQLHRDSTVQSLMFTTSIEGGVIKYVDSPLIRAVQLGRVLVVDEVDKA
PPPVVAVFASLASRGEMTLADGRKIRPRPQPGAGENDIIVSPNFRLILLGNRPGFPFLGN
PFLQHLGDSFSTYPISNPDAESELRVLQQLAPELDVELLKALVLAFQDLRKEFDAGTLSY
PFSLREALALVRHLRRFPDDSLEQALRNLFDFDTHRPETIDALMAVLRKYRLGVERVGMD
AVRGQIVPVDELRKAKEIEFDPAKEGRDTSLGEPKEGKDDGKEHHGGNTFAGGTGGRDTA
GLGGRGGYKRLYKGHDIRQIPDSLKAQVPDEVKNRARDMARKELAEKLAEIDMSSAQASM
YSRYHDHVISHVYQLVTFLENLEAKEEERVWLKRQADGELDESRLSEGLTGEPTVYKRRG
LEKPELGRPQLKPKRIRFVFDVSASMYRNQADGRLARSLEAAVMLLEAFDRLSASGKAKY
RIDVVGHSGESAEIPFVNVDALPTNSGDRWKIVEKMALITQYCWPGDETLNALNKAVDAV
AEADADDRIVIAVTDANFDRYGIGAEDLRRCLTRNSKVHTSLIAIGEGAESEWLPKVLPG
KAFRVKDSGDLARTLRSILSSTLDKGL