Protein Info for mRNA_1265 in Rhodosporidium toruloides IFO0880

Name: 9633
Annotation: K14861 URB1 nucleolar pre-ribosomal-associated protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1898 transmembrane" amino acids 205 to 222 (18 residues), see Phobius details amino acids 448 to 456 (9 residues), see Phobius details PF11707: Npa1" amino acids 80 to 388 (309 residues), 225.4 bits, see alignment E=2.1e-70 PF16201: NopRA1" amino acids 1543 to 1738 (196 residues), 183.2 bits, see alignment E=7e-58

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1898 amino acids)

>mRNA_1265 K14861 URB1 nucleolar pre-ribosomal-associated protein 1 (Rhodosporidium toruloides IFO0880)
MDEQTAGQPPPHRQAKPQQATIPPFDSPDAVVRSFKTRDAAALQAALNQIDKRAAALVAK
EAPRAQPDLLLDYLKLHPGCEGVFEAWDLANKTNNSPLSSAVLSCLTSLVRLASTDPFTP
SPDLLKTLLSPKYHPYLERSLNPGRNDVTTAALKLCNVLVGFGGGKYARKVFGCFGWSPK
VTSRLYKTRLRSLTSSNALSKPDIRTLLILLVLSFLSASDVRLKSQVLETKGLLSGVFKG
LNEDPESVVGLVLEVVAREVVVERRVGLEARRNVFDEACINELVKLYDYPLPVSDDDLPP
SHPSLSIHRFLQLLTTWLSDQIASSPPGRSSHPQRVLSTLLRALKVTESPRQRDLGLEIL
RSAPILAGAFWTKFPSSLDPRLSSRWVSAITFATQVVGLPVARDLAKAGAAPPAVSTILD
TVLPPSTSSTLNRAWYTKSITHETPLVSFLSSLFLLSILQKAAKVLEVMAETSRVLEEGE
GGRWAVQARKVRDELRNRLPDPSIVVGLMTKTAAAAAASAATGKEKEGEATVATKKKDDG
MAEGALLRTNVALRLLFLYHRVAPSLIATLKFDFAKLPQTYAQHARPASSDSDSTDAQGS
CGLLAISSSYALRLAAAHSSSSNISLNRPGDHYKYSLVPLFQLYRTPATHSNRALLREIL
RRQLDSPLLFGVPGADLVIEGEVDVWLRALPVPAAEGAGGSATSEEMDTVLDFFAKCVQK
TLTAPLKLEHSAQEAERGFSRLLATVVAELAANQDQAVRAFVKDAVLHFLAQQKELAMVR
RLVDVLEETLPKEEELVGLLRNCLAVAQGQEVVDGADASLASRLEALEDDEIASAVATLS
PVKHNVFASLAKSTQLDRALAVMPLPLVLLHARTIDLADPIIAQTVLDLVSASSFHVPAA
RILLRRFVNGVQAEEIAALIVRIYGHAGEAAKKEIKEMLVAQEGLLGVFKHDVLSSAGYT
NAVRLLGQLLDSTVASDILLVQPFCDSVLADLNATSPATEQPAKKRKRRSSPPPPATGLS
QRVLAAGPLLPFFATTSSLPLLEALLSHFSADRTTLDAASKQLLGSAFARVLDLPTSTSF
LSFWSSQFSRLNSLSTIGGLEKAGDVLVKGADALLPFSTSSATRSKEWSSLPKADEWAAE
LLAGSTVSPAQAKTLAALLYRSTAARGRYTAWLAEQGAGTDLVALAAPLEAVFKVAEANG
HASAAVQPAIVAALVQQLATLPARADAEALRAIVTLVSATSHDTTTDVEAVLRTRLASLG
RDDFRAADIRLASTLAKADSSLKSALEAFVNATFEGLVRRFAEDEEDGEEVKQLVEELTV
TLHEQSGLSLTGNALSPLVTAITTRRLEQPYATAFGTALCKQQQLKDNEVTRHLNEIFAS
PRFHAFTANPTESPVAVSSALALVLALASSSPTAAANARSVERLISFYRGTLSTVDRSLL
DLFQRIELVSGASISPALRNWAPSVDSASLLDGTRIAAVAASQKTFVRRSWARAFASTRT
SFAPEDDAKTYDPHFIVPFVAALADEDDLKPQEWTTLLESGMLGTVVAALASSDNGLRGL
ARSALAAVIKKVEPLTFREKDELVLVLTQVRLTIYFQAGEAIPSSIALFLAHCVSLIGAP
ESPLYPPFMRFLLQRSTMDVRDVPLFYNMLYSSNTDEFAAAPREERAWMVRYLTEGLVRS
QDWKIYRRRQVFELLASLFEASRQDPPLRKLVLKFLIRATSIPTAARELLSRNGLLGWLS
SQLPLDIAERRLFLHVVCSMAQVVPWDKMAGVADVVEAMVNAVGPDVTAVDAATLLDLIR
HIVTHLSPSSTSSSLLPFILSRLSDTLQALSTTLDTPSASSSVPQRFYTTVTLLAFVRHE
AMLPERKEDRELWSAAVKAGLKAGVKELVTETIRILSG