Protein Info for mRNA_1267 in Rhodosporidium toruloides IFO0880

Name: 9635
Annotation: K00814 GPT, ALT alanine transaminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

Swiss-Prot: 51% identical to ALAM_DICDI: Probable alanine aminotransferase, mitochondrial (gpt) from Dictyostelium discoideum

KEGG orthology group: K00814, alanine transaminase [EC: 2.6.1.2] (inferred from 55% identity to aor:AOR_1_284154)

MetaCyc: 51% identical to alanine transaminase (Arabidopsis thaliana col)
Alanine--glyoxylate transaminase. [EC: 2.6.1.44]; Glycine transaminase. [EC: 2.6.1.44, 2.6.1.4]; Alanine transaminase. [EC: 2.6.1.44, 2.6.1.4, 2.6.1.2]

Predicted SEED Role

"Aspartate aminotransferase (EC 2.6.1.1)" in subsystem Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis or Threonine and Homoserine Biosynthesis (EC 2.6.1.1)

MetaCyc Pathways

superpathway of L-isoleucine biosynthesis I (13/13 steps found)
superpathway of L-methionine biosynthesis (by sulfhydrylation) (12/12 steps found)
superpathway of aromatic amino acid biosynthesis (16/18 steps found)
superpathway of L-tyrosine biosynthesis (10/10 steps found)
superpathway of L-phenylalanine biosynthesis (9/10 steps found)
TCA cycle VIII (Chlamydia) (6/6 steps found)
superpathway of L-threonine biosynthesis (6/6 steps found)
L-tyrosine biosynthesis I (3/3 steps found)
malate/L-aspartate shuttle pathway (2/2 steps found)
superpathway of L-methionine biosynthesis (transsulfuration) (7/9 steps found)
3-(4-hydroxyphenyl)pyruvate biosynthesis (1/1 steps found)
L-alanine biosynthesis II (1/1 steps found)
L-alanine degradation III (1/1 steps found)
L-aspartate biosynthesis (1/1 steps found)
L-aspartate degradation I (1/1 steps found)
glycine biosynthesis III (1/1 steps found)
L-tryptophan degradation VIII (to tryptophol) (3/4 steps found)
superpathway of L-alanine biosynthesis (3/4 steps found)
superpathway of L-aspartate and L-asparagine biosynthesis (3/4 steps found)
L-alanine degradation II (to D-lactate) (2/3 steps found)
L-asparagine degradation III (mammalian) (2/3 steps found)
L-phenylalanine biosynthesis I (2/3 steps found)
L-phenylalanine degradation II (anaerobic) (2/3 steps found)
L-alanine degradation V (oxidative Stickland reaction) (1/2 steps found)
L-glutamate degradation II (1/2 steps found)
L-tryptophan degradation IV (via indole-3-lactate) (1/2 steps found)
L-tyrosine degradation II (1/2 steps found)
atromentin biosynthesis (1/2 steps found)
photorespiration (6/9 steps found)
L-tyrosine degradation I (3/5 steps found)
L-phenylalanine degradation III (2/4 steps found)
L-tyrosine degradation III (2/4 steps found)
C4 photosynthetic carbon assimilation cycle, NAD-ME type (7/11 steps found)
anaerobic energy metabolism (invertebrates, cytosol) (4/7 steps found)
(R)-cysteate degradation (1/3 steps found)
L-tyrosine degradation IV (to 4-methylphenol) (1/3 steps found)
indole-3-acetate biosynthesis VI (bacteria) (1/3 steps found)
pyruvate fermentation to acetate and alanine (1/3 steps found)
sulfolactate degradation III (1/3 steps found)
trans-4-hydroxy-L-proline degradation I (2/5 steps found)
4-hydroxybenzoate biosynthesis I (eukaryotes) (1/5 steps found)
L-phenylalanine degradation VI (reductive Stickland reaction) (1/5 steps found)
L-tryptophan degradation XIII (reductive Stickland reaction) (1/5 steps found)
L-tyrosine degradation V (reductive Stickland reaction) (1/5 steps found)
superpathway of plastoquinol biosynthesis (1/5 steps found)
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I (10/18 steps found)
aspartate superpathway (15/25 steps found)
L-alanine degradation VI (reductive Stickland reaction) (1/6 steps found)
coenzyme M biosynthesis II (1/6 steps found)
superpathway of sulfolactate degradation (1/6 steps found)
L-phenylalanine degradation IV (mammalian, via side chain) (3/9 steps found)
C4 photosynthetic carbon assimilation cycle, PEPCK type (6/14 steps found)
superpathway of anaerobic energy metabolism (invertebrates) (8/17 steps found)
superpathway of L-alanine fermentation (Stickland reaction) (2/9 steps found)
indole-3-acetate biosynthesis II (4/12 steps found)
(S)-reticuline biosynthesis I (3/11 steps found)
rosmarinic acid biosynthesis I (2/10 steps found)
superpathway of rosmarinic acid biosynthesis (2/14 steps found)
superpathway of chorismate metabolism (28/59 steps found)
Methanobacterium thermoautotrophicum biosynthetic metabolism (26/57 steps found)
anaerobic aromatic compound degradation (Thauera aromatica) (2/27 steps found)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.6.1.1, 2.6.1.44

Use Curated BLAST to search for 2.6.1.1 or 2.6.1.2 or 2.6.1.4 or 2.6.1.44

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (509 amino acids)

>mRNA_1267 K00814 GPT, ALT alanine transaminase (Rhodosporidium toruloides IFO0880)
MTSFASALTSTLFTSLHRQMHSSNEPRDPDYRVLTNERMNKHVLEAQYAVRGAIPLRAEE
LREQLEEKGKDAGLPFDTVVNCNIGNPQQLDQKPLTFLRQVSALTEYPDLLDHPSTSSIF
PSDAIERARSLLKEIGSVGAYSHSMGVPAIRQRVAQFIENRDGHPSSPGKIYLTAGASTG
VSNILQILISSPLDGVLIPIPQYPLYTAALALNAARAVPYYLEESADWGLDVENLKANLE
KARHEGTVVKAMVVINPGNPTGNCLSSENMQDIIKLCYDEKLVLLADEVYQSNVYGEARP
FVSFKKALKDMGAPYADNVELVSFHSISKGQSGECGRRGGYFELCNFHPEAEEQVYKLAS
IQLCPSLGGQIGVDILCTPPKEGDESYALWKEEVSGIARTLKERSQIILKAFRELEGVTC
NDAEGAMYLFPTITIPPKAIAAAKAAGQAPDAFYSLKLLEESGLCVVPGSGFGQKPGTYH
FRTTFLAPGTEDYVRRLKKFHEDFMREYS