Protein Info for mRNA_1270 in Rhodosporidium toruloides IFO0880

Name: 9638
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 501 transmembrane" amino acids 24 to 41 (18 residues), see Phobius details amino acids 47 to 65 (19 residues), see Phobius details amino acids 76 to 100 (25 residues), see Phobius details amino acids 105 to 123 (19 residues), see Phobius details amino acids 136 to 161 (26 residues), see Phobius details amino acids 169 to 189 (21 residues), see Phobius details amino acids 257 to 279 (23 residues), see Phobius details amino acids 296 to 316 (21 residues), see Phobius details amino acids 324 to 344 (21 residues), see Phobius details amino acids 354 to 373 (20 residues), see Phobius details amino acids 393 to 411 (19 residues), see Phobius details amino acids 423 to 443 (21 residues), see Phobius details PF07690: MFS_1" amino acids 45 to 395 (351 residues), 74.7 bits, see alignment E=7e-25 PF00083: Sugar_tr" amino acids 48 to 457 (410 residues), 219.7 bits, see alignment E=7.4e-69

Best Hits

KEGG orthology group: None (inferred from 41% identity to cnb:CNBE5180)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (501 amino acids)

>mRNA_1270 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MATHVLALPNNTASSWWKDPSLRRNVAVAFVCYWATFALGYPKGNKLGLISASSYLPTLI
LSPAYQWMADRYGRRFCAILGGWIIIAGAFIGCFANGLAMLIVGRAIVGTGGFVMIMGSN
LLANEILHPRLRPIGSAFFLCFFYVGSAVSAWVCFGIVAAGWNANWGWRLPTLLQALGPA
IVAVATMFCPESPRWLVAKGRCEEAHRVLANQHANGKLDDPLVLQELADIEDALEREKAA
KLGIRSFFSTPGNRHRLIILLCTSVGAQLNGASVFSYYLAPVLRLVGVTSSKEQTAINGG
LTIWNLIISMLGATFVDRIGRRKLWLTSTTIMFLSYCCLIGLSAGFEHSKHKGFGYGVIV
FIFTSYGGYSLGWTPLPYPYTTEILPYSMRASGLALFCWLKNATLCFTQWVNPIGLAAGG
WRYYFLFFAVLLCLLVLIYTFFVETRGLTLEEIKLIFDSKDADKSATVGEQKEAADAQVK
YEAKQRHVEHLERKYSDEESA