Protein Info for mRNA_1292 in Rhodosporidium toruloides IFO0880

Name: 9660
Annotation: K10848 ERCC4, XPF DNA excision repair protein ERCC-4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1060 PF02732: ERCC4" amino acids 830 to 960 (131 residues), 69.1 bits, see alignment E=2.6e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1060 amino acids)

>mRNA_1292 K10848 ERCC4, XPF DNA excision repair protein ERCC-4 (Rhodosporidium toruloides IFO0880)
MPSSRADKGKGRADDQTLEQAVQPKPGKVKPPNATKNSLETNRLLPFQRNILKQLVPPEN
ALPNAGDAMLVMAGGLGLRTIVTTFLKIYDMPEKLVLVVNATPEEERGFAEEVGMRLKVV
GYELGDSQREKMYKDGGLFSVTSRILIVDMLKGTIPVSLITGLVVLHAEEVKPTSQEAFI
VRIYRQQNKLGFLKAFSDRPESFSFGLSPLQTTLMQLKLREVIIVPRFHEDVDTDLKKRK
ADVVELYQPLTHNMLDIQTAIIECMEMTLSEIKRSNTYLEVDDLTFENALFSSFDRLVRI
QLDPVWHKVGPKTRGLVNDLTTLRKLLVYLLSFDCVRFNQYLETLLSSHTTTIGALDRRD
RPAWLGTAAADTIFSVARNRVYLQKAIAKPGEGRKERELTVDGMEIPEVLNADDWLADGP
TEEEEQLLRDLEETARREKEAKDRAAGVTNGEDKEDKDAMPPPQVPTPQKPKKKGWLPPG
VEPVLEEQPKWMVLAEVLDEIETSIHFSPYDPYGYSNDTVLVMCNSTDTCLTLGNYLSSL
NPETSEGRSFLESKLNSYFFWKAHMGKMQNSLKRTPGFNKGERRSSSSNAAAGSSGSGTT
TGAFASSNGSSKFGGNKDGDGEMSAALKRKDFKRGQAPPTKRRRVRGGGATGSTAGATHT
SGAAPMFSAATGANPEALEEEVKKIAELVDSSGTPGNVESEEVIEETFNPLDFEEYFGLI
SNEDVVIIRPYLDDEDDRVLEELRPKYVVMFDPNPSFVRRIEDSVEEQKYLSEIRREKDA
FVRLIEEKGSMAIPHEAEYRPGEDEGELMRTVNTRAGGRQVVITPPKVIVDMREFRSSLP
GLLHAGKFEVIPVTLSIGDYIITPEMAVERKSIPDLIQSFNSGRLFQQCELMTAHYKQPI
LLIEFDEKKSFNLETYVDTKTYASSPNDIDLRSKIVLLTISFPKLRVIWSSSPYQTVEIF
RDLKENREEPDQAKAQLVGLEDDNAETSGATGEAGFNLAPQDILRSLPGVSSKNYRYLSS
QVENLEALVQLDLNELQALIGVEPARQLHGFLHSDMFFQG