Protein Info for mRNA_1310 in Rhodosporidium toruloides IFO0880

Name: 9678
Annotation: KOG3022 Predicted ATPase, nucleotide-binding

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 343 transmembrane" amino acids 85 to 103 (19 residues), see Phobius details PF10609: ParA" amino acids 16 to 269 (254 residues), 253 bits, see alignment E=3.1e-79 PF01656: CbiA" amino acids 21 to 181 (161 residues), 29.9 bits, see alignment E=5.3e-11

Best Hits

Predicted SEED Role

"Cytosolic Fe-S cluster assembling factor NBP35"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (343 amino acids)

>mRNA_1310 KOG3022 Predicted ATPase, nucleotide-binding (Rhodosporidium toruloides IFO0880)
MSTPQEARLVRRLSHISHILLVLSGKGGVGKSSVSVQLALSLLASDPSLRIGLLDVDLTG
PSLPRMLGMEGRDVLASEDGWVPVARTLSSPGLLACISIGFLLRSSRESVVWRGPKKDAM
VRQFLGEVVWGELDWLVVDTPPGTSDEHISLLESLRPLLAPQQPNALPLPTLSSVLVSTP
QALSLLDVSKELSFVRRTQLPLLGLIENMSGYVCPHCGDVVGVFGQGGGEDFCRREEEKC
ERGEVEQGVRFLGRVPIDRELVGLLDDVAAHGAPTVDAEDASRGDAGGGEGRKSLVERYQ
AIPSFPVVRAIADTVRSLVDEQVERERAQGKRLVAVERASSRP