Protein Info for mRNA_1315 in Rhodosporidium toruloides IFO0880

Name: 9683
Annotation: K12813 DHX16 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1115 PF00270: DEAD" amino acids 469 to 619 (151 residues), 25.6 bits, see alignment E=1.9e-09 PF00271: Helicase_C" amino acids 664 to 791 (128 residues), 52.9 bits, see alignment E=9.2e-18 PF04408: HA2" amino acids 853 to 942 (90 residues), 72.5 bits, see alignment E=6.8e-24 PF07717: OB_NTP_bind" amino acids 1002 to 1082 (81 residues), 67.4 bits, see alignment 2.4e-22

Best Hits

KEGG orthology group: K12813, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC: 3.6.4.13] (inferred from 63% identity to cci:CC1G_02978)

Predicted SEED Role

"RNA helicase, putative"

Isozymes

Compare fitness of predicted isozymes for: 3.6.4.13

Use Curated BLAST to search for 3.6.4.13

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1115 amino acids)

>mRNA_1315 K12813 DHX16 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 (Rhodosporidium toruloides IFO0880)
MPTSLETWVSDNLLVLLGASDSTTTAYFITLAQSSPSASALVQTLTQNGLSDSAQTRRFA
ADLFDRAPRKTSKRAEQNAADARRKAEKEKKQLAGAKFSLLLDDEEAAGGAQGQGSSSSS
AKREKRDKGERSRDKVRKRETAIGGREDAWADEDEEEREIKRRREEDRNAREAARRPRGE
SAALDEGQLLDEEEEEEDEDTRRERERLADLAERDAFAARMREKDKDRTKRLVEDRSAKK
DPESLLRAKLAADDPDSVKRQMGSLRERSRQSYLGKREQQQLDLLRLEIADWERDFKGVK
LTKSEQREYERKKELLRLAEERLAIDEGDDHYQMPDDYFTAQGKIDSKRKQDLLTSRYQD
VKPRSAFGGKKPEEFITDLEQYEMEQTTKAQLTAGALDRETVDIGGEYDYVFDESVQIQF
ALDMEDRIEGTINPKDAALQAQIDEAQRRAQSIDETRKSLPVYQWREQFLEAVSQYQVLV
IEGETGSGKTTQLPQYLYEAGYCSNGQKIGCTQPRRVAAMSVAARVAEEVGCRVGAEVGY
SIRFEDCTSDKTKIKYMTDGMLLREFLTEPDLAGYSCMIIDEAHERTLSTDILLGLVKDI
ARFRPDFRLLIASATLNATKFSDYFDGAPVFRIPGRRYPVDILYTPQPEANYLHAAVTTV
FQIHTTQPKGDILVFLTGQDEIEAAQESLEETARALGNKVAELMICPIYANLPTDMQARI
FEPTPEGARKVVLATNIAETSITIDGVVYVIDPGFVKQNAYNPRNGMESLVVTPCSRAAA
GQRAGRAGRVGPGKCFRLYTKHAFMHELEQDTVPEIQRTNLGMVVLMLKSLGINDLIGFD
FLDPPPGDTLIRALDFLYALGAFNDKGELTKMGRRMAEFPMDPALSKSILASEKYNCVEE
VLTIVSMLSESGSLFYRPKQKKLEADTARQNFIKPGGDHFMLLNVWEQWQDSGFSVSWTY
EHFIQIKSLTRVRDIRDQLVGLCERVEIFVEGNPNSSDIIPIQKAICAGYFQNTGRLNRS
GEAYRTIKTNQTVNIHPSSSMFQHQPPPKLILWFELVMTSREYARQVMEIKPEWLLEVAP
HYFKPADFDSLGGTKKGQINAKAAGAAQLPKQGQA