Protein Info for mRNA_1316 in Rhodosporidium toruloides IFO0880

Name: 9684
Annotation: KOG4711 Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1068 transmembrane" amino acids 19 to 36 (18 residues), see Phobius details amino acids 42 to 67 (26 residues), see Phobius details amino acids 112 to 130 (19 residues), see Phobius details amino acids 137 to 157 (21 residues), see Phobius details amino acids 165 to 188 (24 residues), see Phobius details amino acids 631 to 649 (19 residues), see Phobius details amino acids 658 to 676 (19 residues), see Phobius details amino acids 687 to 705 (19 residues), see Phobius details amino acids 715 to 734 (20 residues), see Phobius details amino acids 739 to 757 (19 residues), see Phobius details amino acids 777 to 796 (20 residues), see Phobius details amino acids 892 to 914 (23 residues), see Phobius details amino acids 935 to 946 (12 residues), see Phobius details PF10337: ArAE_2_N" amino acids 8 to 453 (446 residues), 203.2 bits, see alignment E=1.3e-63 PF13515: FUSC_2" amino acids 646 to 792 (147 residues), 46.2 bits, see alignment E=7.6e-16 PF10334: ArAE_2" amino acids 797 to 1052 (256 residues), 136 bits, see alignment E=2.8e-43

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1068 amino acids)

>mRNA_1316 KOG4711 Predicted membrane protein (Rhodosporidium toruloides IFO0880)
MVVFLANFVLMLEPASEQVFGQASFFGMIVAIMLPPTFPVQVFLFVSAMLVLGMCLGWAW
GCAAMAAGLKARSQVILAAAVQRAQTSVASATNPDVAYRSTIFHGNFLDARSTVVFGVFL
GVGTFFFGLIRAAAPKLMLLAIFGTIVVDVMCSYGPLFPVNQYTLATTFLIPTACYIAVA
LAGTVLLFPRTLNTSWTTDLVDKVLSPILQRAQMHSKLLSTPPPRSDSGSSESEWSKLGS
IVSSTQEASSAGLEGLLGMLGMMELEISYGRLSAKDLKRLVEPLRELHNRSVLLGALWST
VEARFKRAVAFERAALASDETSTSTSTEDEKPKRRRHVQHGKDGKETGRSETARMQRMRR
TLKNAERENQHDLAALLPIFADASQDMRAANDAALLSAMEWLTTQNEGRWSWIWRRGGPK
REEEERLAQLEKQVLRLEDALREYRWKRREAIVEPFRDFFDPATGLLRPIGQRGDSTSGA
GRLFAPGSLFAVLSASDNLVLYSQAVVAFTRDIRGLAQQRRRNKLWFPTGLRRMGNLVRG
RGPATNVVPDGDNPDSLQDHADSDDDSDDSTLASGKEKEKKAEKAKKGDADFFNDAALRG
RDPDARAPRNAVQRGSLLVYRFFHWWTSPNAVFALKYTAASIVCWLPQVFKTTAWLSYSQ
KVLWTLITAQTFLAPYSGDQFLSTVQRILGTALGLVWGMVIWYVGSANGPGTRPGVGAAL
FNLMLPLVAARLFAPPASLMIAIMMAVTSSLVVGYSWQDKHLPQYGNPGVGYSVAWRRGL
LVIIGAAVAFVFALLPPQSSRVFVRRTHARCIEELGQLYTSIVSSWIEEDVRTTKEGESA
GEDGYRVFTPAFHKAARARMLALRVKLNASKTTIFQSSYEPSLRGEWPQDQYLHLLMLQL
GLLQALGQLGQALIRLEPEWRRQLVQDTAFLNQPLIADVTSTFYLISLALRQGSPLPEAT
PGPLLDRLLYHDRRLRMLTDEPEPGHEDEDEHAHAKHVDFEGARMGGFKFTFDVLRDELF
GTYASALEALSNILLDTDELEIAIKGLVGEVHFPGYSVLAERQLHAQA