Protein Info for mRNA_1326 in Rhodosporidium toruloides IFO0880

Name: 9694
Annotation: KOG1239 Inner membrane protein translocase involved in respiratory chain assembly

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 99 to 121 (23 residues), see Phobius details amino acids 189 to 209 (21 residues), see Phobius details amino acids 257 to 281 (25 residues), see Phobius details amino acids 369 to 394 (26 residues), see Phobius details PF02096: 60KD_IMP" amino acids 162 to 406 (245 residues), 35.5 bits, see alignment E=4.7e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (430 amino acids)

>mRNA_1326 KOG1239 Inner membrane protein translocase involved in respiratory chain assembly (Rhodosporidium toruloides IFO0880)
MILRSRLATPLGCAAKSALSRRPARQLAPPAFLLASRNFSLSSSTPPPADSAPSPPTPDL
APPVKPVFSDLFAPDSLPDPTFFEPLSNALLSVPSSLSLSYLAFIPIATVLYRAVLTLPF
NVWQRRRIARFTNDVLPLVKKEQARIALETRADCRRAGKSYEEYQKEFQKRAKKEAYAIA
RRHNCSPRLTVIVPPLVHMPILITATLVIRDACDRAQSLLAVTPASLPSLLDLAPGSTLT
TSALSNLHDLASTSFLWVPSLVLPDVTMYLPLGVGLLMLLNIEVSSQIRRQTQEAREAIE
NPLDAMVAQAGKPISAAERRRMVARGARDGKPMIVRGLATVPSRPAPPPPPPQAVERKKP
DTNKIISNALRLASLAFIPIAGMAPAAICIYWMTSNAFTLVQNAVFRWLDRDEEKKRRMK
RIMSSKAVGV