Protein Info for mRNA_1330 in Rhodosporidium toruloides IFO0880

Name: 9698
Annotation: HMMPfam-LCCL domain-PF03815,ProSiteProfiles-LCCL domain profile.-PS50820,SUPERFAMILY--SSF69848

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 714 transmembrane" amino acids 201 to 222 (22 residues), see Phobius details amino acids 377 to 392 (16 residues), see Phobius details amino acids 398 to 415 (18 residues), see Phobius details amino acids 464 to 484 (21 residues), see Phobius details amino acids 497 to 515 (19 residues), see Phobius details amino acids 527 to 548 (22 residues), see Phobius details amino acids 556 to 585 (30 residues), see Phobius details PF03815: LCCL" amino acids 250 to 353 (104 residues), 54.3 bits, see alignment E=6e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (714 amino acids)

>mRNA_1330 HMMPfam-LCCL domain-PF03815,ProSiteProfiles-LCCL domain profile.-PS50820,SUPERFAMILY--SSF69848 (Rhodosporidium toruloides IFO0880)
MPAQGSEPPGDHPNPWQSTRSSHQLDHIVELPELPSHGSAAVDGQNGSITGAQLVDEPIA
KKDDDALAEEGGVYAEVRSRSRSASTPSWFGSVGSRLLGRKSKSTESSLGGSSGEASPRL
PEGVRLAAVSPFDDKLNSLLVRIQAKRPRLGRALVWVRGPSPPHIETILPPFPLPYFGPR
LARFERWCTARLMPLQRRRHLTTPLFLLAWILAFAFLVRASFFTSSTNFGAPTWVDATSS
FWSANDGCGINGTTCEPFTNDSFIFRCPSQVLSTQLLNNRAVGDDLVIYQPLVVGGMDPQ
STYRADSWICAAAIHHGLFDDRRGGCGEVQMVGEFTGYVGGERHGVDSIAFESTFPSSYR
FVEGVSQNGCQDLRDDILGFDVAMTFILSFFIRPGPQAFFWILLCIGAWHVILVSDPSAM
PPDLETAFKNFLPVLFVGESFWRHAWRWVAPAFENSGFILERTVWYLAGFWVGLLMNVSL
NWIPIDRLTPHDIDQQPGGLIAVIVLVIFLLLVVVNQLRVIRRTGWFFFYLRWYIVGGIV
VGILSALPGLEFRLHHYIAAIVLMPGTAFVTRPSAIFQGFLLGMFLDGAMRWGMDSILQT
PASLVGDGTTGSPLPDFLTNATNFAAALSSGYIQWSSIPVDVAGKGYDGFALLVDDVLRQ
TGAATNYSLAALDANVVHYFRLAYQQGGTSGDFTKAATAFLSNSTWINPASGPS