Protein Info for mRNA_1331 in Rhodosporidium toruloides IFO0880

Name: 9699
Annotation: KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 988 transmembrane" amino acids 149 to 163 (15 residues), see Phobius details PF12828: PXB" amino acids 71 to 213 (143 residues), 134.1 bits, see alignment E=4.7e-43 PF00787: PX" amino acids 272 to 417 (146 residues), 36.7 bits, see alignment E=5.8e-13 PF12825: DUF3818" amino acids 474 to 814 (341 residues), 430.4 bits, see alignment E=7.3e-133

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (988 amino acids)

>mRNA_1331 KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins (Rhodosporidium toruloides IFO0880)
MSSADSPSSSRQTSLTPTSASRSSSLLVPVDDSKPTRRIPLRTSSLASDLGILPPPSIAA
SLAPPSDNPLLLTPLRAHYLKRELVTLEFVKELSQLDSPGALSVLGPPFLPKSRFVNGVP
QPAPAPGSDAARSEERDWESNVDLPFLRFVFHHFVLSFPFLIACPPTFFSHKLQPFVYSF
VSRNISSSDERESVTKRKRIAGKVEKHLGLVMSAAIKLTENNGKEEVVRIEDDGSMHAAA
PATQQSGAALVGMKRRGPLTKLERADEEFSINVVSVRNRQTKSRMRIKKHEEFLVRTRRK
GMSDVYVARRYGDFVRLAETLKKECIEEDVRGPPAKDRRSTDMKPAASPDASTQPSPRPS
FTGDESPSQPPTPVFDPNHVPSLARERNRLTLRAYLRSLLSNPVIAASDAFQSFLLESPI
QLTPAEEQDVLIREEMDRIREQEMKSFRAEVEERVEELEGYLRKFREELVKHDGLSRVFA
TIRQTERVDDLPVEYRKVMEWARISLASTIYQLFLGSDNSSSVFASLKRVHGLMPYFMLR
GILKISNPVAMIRSVLDLFLARPFGSTSLVQKMFSSGLNEEAKDLRDDAELVARKIGDDR
LCEKVRQFVDAPRDDQDAMRLDAESEGIDLMTVILRQSGAPRLDPRTMQYLARCAVRYEE
YKKVRDALHDPDEDEGPTNDEAWLYEDLHVYKRLITAARDKEQLIELIFEGSTSELLKDI
VTIFYEPLARVYKAANIAESLSDLQAFINDLIKTVEYAEDAKLTEPQRTVQLFVDLVARH
EDRFYHFVHQVHSKGEGLFDNLMAWIELFINFVRDGLPSRVSLDFLLPVGGKEREEVLAE
VDALVEYHRKLKLAHHERMKKRMVKGGDDLDKDADAAFVSGVMQNLHIGEVMDDVHDVEA
EDSDEEAAGYSDSESELEADEQPPPPLPNKDPPQVPPRPPRKKDRAPIDPPKLEHIPRLV
PVFVELVRKELNEARRQKGKPRRSEGLQ