Protein Info for mRNA_1334 in Rhodosporidium toruloides IFO0880
Name: 9702
Annotation: HMMPfam-RNA polymerase II transcription elongation factor-PF09816
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (583 amino acids)
>mRNA_1334 HMMPfam-RNA polymerase II transcription elongation factor-PF09816 (Rhodosporidium toruloides IFO0880) MQDVQLSPAFIAWAQRRDRASANGGSNGSTASEGLYSFKYHNKPASVDPSSSATVFAVPS TSTSSQSAEPDTIYASFPSTKQGVGKNKGKQVEHRFVGTETQAKEVDVVLVWDEAAQCWS LEPLVSSISFKPDRTPNSKAPPTPAVPSAHELQSTTRAFFDSDATNPFAFVAAQPATKNE DKPAAKRPKSSSSSSAPPPPGLASLLNPASSPSANGFLPPSAAQSEDEDDDMFEEVGVGE SRPQVAEVPSYLRTPGGGTAPLPDLAPVSAPPPVPPKPPSPPQPVAQPPSQPPAPPPPRP IAPPQPKNSPPRPAPPQPAPAPPRPHPSYGSKIPASYTRQLAQKAKEADEASSDSDDEED EYEDEDVRMRPVAASVSASRPPAQGKKAAEADRTTRSGATFASAPAQPAHLGPSSKPAPP ARSTTASKSIQRVAPNISDSSSSDSSSDSDDSDSGGVPSAVRAQMSRQVNAQMAKVRSGT GTPVPPAVPAGAGQRRVDYPSIQAAQAVQQQQARWQQQARWQQQVQAQQQQRAAAQAAAS AAGRPAPGQVGRKGLAPPVRTAASLDPRQAEIENDIPDSSEEE