Protein Info for mRNA_1358 in Rhodosporidium toruloides IFO0880

Name: 9726
Annotation: K01648 ACLY ATP citrate (pro-S)-lyase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1157 PF08442: ATP-grasp_2" amino acids 66 to 222 (157 residues), 33.3 bits, see alignment E=1.1e-11 PF16114: Citrate_bind" amino acids 292 to 469 (178 residues), 294.9 bits, see alignment E=5.3e-92 PF02629: CoA_binding" amino acids 544 to 650 (107 residues), 53.3 bits, see alignment E=1.1e-17 PF00549: Ligase_CoA" amino acids 710 to 833 (124 residues), 57.8 bits, see alignment E=3.7e-19 PF00285: Citrate_synt" amino acids 935 to 1135 (201 residues), 65.7 bits, see alignment E=1.3e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1157 amino acids)

>mRNA_1358 K01648 ACLY ATP citrate (pro-S)-lyase (Rhodosporidium toruloides IFO0880)
MSAKPIREYDAKLLLAYHLARAPTAGSKAVARDGFQSPEVKVAQVSWDPETNQVTPDAAL
PHWVFTEKLVVKPDQLIKRRGKAGLLALNKTWAEGKQWIAERAGKQVQVEKTTGTLNNFI
VEPFCPHPSDAEYYICINSVREGDVILFTHEGGVDVGDVDAKALTLLVPVGGELPSRDEI
RSQLLKHVTGAERQEALIDYIIRLYSVYVDLHFAYLEINPLVAVENPSTGKTDIFYLDMA
AKLDQTAEYVVGPKWAIARDPSIINPAAAPMSNGKISADKGPPMFWPPPFGRDLTKEEAY
IAKLDGSTGASLKLTVLNAEGRIWTMVAGGGASVVYSDAIAAHGFAHELANYGEYSGAPT
QTQTYEYAKTILDLMTRGTPNPQGKLLFIGGGIANFTNVAATFKGIITALKEYQHRLQEH
KVRIFVRRGGPNYQEGLKAMRLLGETLGVEIQVFGPETHITSIVPLGLGLIKSVDDALKV
PGARSAADATGTLTPVPGSPKSRAAQLPTGASTPSRPQPQDNIVSFSDKIHAPDSGRPWY
RPFDETTRSIVYGLQPRAIQGMLDFDFACGRETPSVAAMVYPFGGHHVQKFYWGTKETLL
PVFTSMKEAVAKCPDADVVVNFASSRSVYQSTLEALEFPQIKAIALIAEGVPERHAREIL
HLAKKKEVIIIGPATVGGIKPGCFRIGNTGGMNENILSSKLYRAGSVGYVSKSGGMSNEL
NNILSLTTDGAYEGIAIGGDRYPGTTFIDHLLRYEADPNCKMLVLLGEVGGVEEYRVIEA
VKSGQIKKPIVAWAIGTCAKMFATDVQFGHAGSMANSDLETAEAKNNAMRAAGFIVPPTF
EELPQVLAETYQKLVGDGTIQPKPEVPPPQIPMDYNWAQTLGMVRKPAAFISTISDERGQ
ELLYAGMPISKVFEEDIGIGGVVSLLWFKRRLPAYATKFLEMVLMLTADHGPAVSGAMTT
VITTRAGKDLVSSLVAGLLTIGDRFGGALDGAAQEFTRAFEAGLTPREFVDSMRKANKLI
PGIGHKVKSKANPDKRVELVKNYVFKHFPSTKLLEYALAVEDVTSAKKDTLILNVDGAIA
VAFCDLLKNSGAFTTEEAAEYMKIGTLNGLFVLGRSIGFIAHHLDQKRLKQPLYRHPADD
IFIQPFNTDRILVQQRQ