Protein Info for mRNA_1392 in Rhodosporidium toruloides IFO0880

Name: 9760
Annotation: HMMPfam-DASH complex subunit Dam1-PF08653

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 PF08653: DASH_Dam1" amino acids 62 to 116 (55 residues), 66.7 bits, see alignment E=6.3e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (328 amino acids)

>mRNA_1392 HMMPfam-DASH complex subunit Dam1-PF08653 (Rhodosporidium toruloides IFO0880)
MSVQPAGPSQSRSRASSLSRSASGRPTTPLRRISTTSLRALSLSQSRSNNASYTAQPLSH
LSAVFAELADAVSDLTANFEELESVQKRLDGVNESFAGWLLGLRANGYTVDFLEAPTKLN
FDLAAERAALRYERDQAQAQLLHEQHQEQLLAEQEHQRQQQAELDAGGAGEQTFMTNDED
QSFVSHHPGHADGMRGGTRGRGGAGVRGGRGGAAGTRGGKAPTLTKKRKEEMAAFADPIL
PLLPIDVREKRRTETERVLWILRERGQAGASSAVQDLVAHLSSGGPTQSVPQVRINEVLL
ALVRAKVVIKGPVKGITSYRLEPNKYPS